mRNA_Ecto-sp9_F_contig11244.1070.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11244.1070.1
Unique NamemRNA_Ecto-sp9_F_contig11244.1070.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11244.1070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 1.780e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 
Query:    1 GEWVAVLTALVAMAVETHTLNHFFSDAEQRCENLRKKAVSGTKMSTRSFQGMLLSVGGNGAVEFWQRLMKSVDGEMDAVKNCADEDXXXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQ 369
            GEWVAVL ALVAMAVETHTLNHFFSDAEQRCENLRKKAVSGTKMSTRSFQGMLLSVGGNGAVEFWQRLMKSVDGEMDAVKNCADEDXXXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQ
Sbjct: 1338 GEWVAVLAALVAMAVETHTLNHFFSDAEQRCENLRKKAVSGTKMSTRSFQGMLLSVGGNGAVEFWQRLMKSVDGEMDAVKNCADEDXXXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQ 1460
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BLAST of mRNA_Ecto-sp9_F_contig11244.1070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.200e-68
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 1 
Query:    1 GEWVAVLTALVAMAVETHTLNHFFSDAEQRCENLRKKAVSGTKMSTRSFQ--GMLLSVGGNGAVEFWQRLMKSVDGEMDAVKNCADEDXXXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQ 369
            GEWVAVL ALVAMAVETHTLNHFFSDAEQRCENLRKK VSGTKMSTRSFQ  GMLLSVGGNGAVEFWQRLMKSVDGEMDAVKNCADE+ XXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQ
Sbjct: 1732 GEWVAVLAALVAMAVETHTLNHFFSDAEQRCENLRKKVVSGTKMSTRSFQASGMLLSVGGNGAVEFWQRLMKSVDGEMDAVKNCADEEDXXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQ 1856
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11244.1070.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.780e-7199.19protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.200e-6895.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11244contigEcto-sp9_F_contig11244:265..2204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue1.6e-61
Seed eggNOG ortholog2880.D8LI13
EggNOG free text desc.mRNA processing
EggNOG OGsKOG0825@1,KOG0825@2759
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size371
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11244.1070.1prot_Ecto-sp9_F_contig11244.1070.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11244 265..2202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928367.368331-CDS-Ecto-sp9_F_contig11244:264..4141622928367.368331-CDS-Ecto-sp9_F_contig11244:264..414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 265..414 +
1692277848.483919-CDS-Ecto-sp9_F_contig11244:264..4141692277848.483919-CDS-Ecto-sp9_F_contig11244:264..414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 265..414 +
1622928367.381367-CDS-Ecto-sp9_F_contig11244:865..9821622928367.381367-CDS-Ecto-sp9_F_contig11244:865..982Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 866..982 +
1692277848.4944198-CDS-Ecto-sp9_F_contig11244:865..9821692277848.4944198-CDS-Ecto-sp9_F_contig11244:865..982Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 866..982 +
1622928367.3913517-CDS-Ecto-sp9_F_contig11244:1594..16721622928367.3913517-CDS-Ecto-sp9_F_contig11244:1594..1672Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 1595..1672 +
1692277848.504479-CDS-Ecto-sp9_F_contig11244:1594..16721692277848.504479-CDS-Ecto-sp9_F_contig11244:1594..1672Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 1595..1672 +
1622928367.4025729-CDS-Ecto-sp9_F_contig11244:2178..22021622928367.4025729-CDS-Ecto-sp9_F_contig11244:2178..2202Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 2179..2202 +
1692277848.512684-CDS-Ecto-sp9_F_contig11244:2178..22021692277848.512684-CDS-Ecto-sp9_F_contig11244:2178..2202Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 2179..2202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11244.1070.1

>prot_Ecto-sp9_F_contig11244.1070.1 ID=prot_Ecto-sp9_F_contig11244.1070.1|Name=mRNA_Ecto-sp9_F_contig11244.1070.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=123bp
GEWVAVLTALVAMAVETHTLNHFFSDAEQRCENLRKKAVSGTKMSTRSFQ
GMLLSVGGNGAVEFWQRLMKSVDGEMDAVKNCADEDDDEEDDDFGKTPGV
CIVCWCPTAHIDASQILMCDGCQ
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mRNA from alignment at Ecto-sp9_F_contig11244:265..2204+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11244.1070.1 ID=mRNA_Ecto-sp9_F_contig11244.1070.1|Name=mRNA_Ecto-sp9_F_contig11244.1070.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1940bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11244:265..2204+ (Ectocarpus species9 EcSCA_722f female)
GGGGAGTGGGTCGCGGTGCTGACGGCGCTTGTGGCCATGGCGGTGGAGAC
GCACACCCTGAACCACTTCTTCTCGGACGCGGAGCAGCGGTGCGAGAACC
TGAGGAAGAAGGCCGTGTCGGGGACGAAGATGAGCACCAGGTCTTTCCAG
GCGAGTGTGTTATGGCAAACGGCGGTGTCAAACGAAGGTTTTGGACATCA
AACTTTTATTGTTTTGTTTTAGATGTACTGCTTTTGTCGGTCGGTGTGGT
TATTTTCTAAGTATGCATCTCGGAGAATCGAGAGACAACATTTCTGTCTG
GAACCAATCTTTTTGCTGCCCAGACGAGTTCTGGCGGGCAGGGTCGGTGA
AGGTTTTGAAGTCGTGTTTTTGAATATACCCATGTATGCGTCGTCGTGCG
GTTATGTTTTCTACCAGAGAACCGGGAGATGAGATAAACAGTTTGGAAAC
CACTTTGCATGCTCTTGTTGGGAGGTTCCGTCCTCTTGGCTTGCAGCGGT
CGGCCTGCTATTTGCCTTTTGTCGCTGGTTTTGTCGACGTGCTTTTGCTA
GCAGTGACGTTTCCACCGTGCTTGGGTTGTCCTTATTTTTCTTGCGGACA
GGGGATGCTTCTGAGCGTGGGGGGCAACGGTGCGGTGGAGTTCTGGCAGC
GGCTGATGAAGAGTGTAGACGGCGAGATGGACGCGGTTAAGAACTGCGCC
GACGAGGACGATGATGAGGTTTGTAACGCACACCCACGAACTTAAAAGCA
TATTTTCCAACCGCACTTGACACTGGCGTCTTGTCATTGGTCAGCTGGTT
AGCGTGGTCGATTCTAGCACTATACCCACGCACGGAGACATTTATTTTGG
TTCTGTGGAGACTGGCGTGTATGCAACGTGAGTCGCCTGGCTAGCGCGGT
CGATTCTGACCATTCTGGCCAGAGAGAACCGCGAGCACAAGCACGTTGGG
CGCGAATACCGCACTGCACGCTGTACGTAAGCATGCGAATAGCGCGTGGG
TGCAAGCCCACCAGTGCTGCTGCATCGATTGTGGTGTTGAGGAAGGACAA
ACTCTTGGCTGGGACATATATAAGCGGCACGCTTCTCCTGTCCACGTTAA
GAGCATGCGCGCGCATCTTCCGCTTCTGCGGCTCCTCCTGCTGCTGCAGC
TGCTGCCGAGGCGGTTGTTGCTGTTGCTGTGTGGTTGGGTTCGTTGTCTC
GCGGGGCGGGGGATCCGCGGATATTGTTGTGGGGTGGTCAAAAATCCTCC
CCGAGCCCCCATCATCACCGTCATGCTCTTGTACGGTGTCCTTTCCCTCC
GCCCTCGGCGTGGGTGGTTAACGTGAACAGGAGGACGATGACTTCGGCAA
GACCCCCGGCGTGTGCATCGTTTGCTGGTGTCCCACCGCCCACATCGATG
CAAGCCAGGTGCGTGCGTACGGTAGCCGCGGTGGTGGTTGATTTGACGCC
GCCGCCACGATGTTTTCCTAAGGTCGCAGGGAGGGAGTAGTAGACGGCAG
ACGGCAGCATACAAAGGTATTTAGTACCAAGTATGCATGTAGGAAATGAA
GTACTTGAACAGGGGAGGCAGTCTCGCGTGCGTAGCGCCAAGACTGTACG
ACGGCGGTAGCGCGCTATGCTGGTAACAAGCTTCCGTGACGAAACGGTAG
GAACCGTAAATCCAAATATGTGTACCATGAAACACCCATGGGGTTATTTT
GTGGTATTGCTCATGTGACGGCTGCGCCGTTAGGGAAGCTAGCACACAAA
GACCGGACGGAACGGACAAGAGTCTAAAGCTTTACCATGGTATTACCATG
GTATGGACCAACACCAACACCCAGGTGAGAGAGGAACGGCGGCGACCACA
TGACGCCAGCTCACCCACCACCGGTGACGCCTGCTGTTGTTGTTCCTCAT
GCCCGAACACGCAGATCCTCATGTGCGACGGGTGCCAGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11244:265..2204+

>mRNA_Ecto-sp9_F_contig11244.1070.1 ID=mRNA_Ecto-sp9_F_contig11244.1070.1|Name=mRNA_Ecto-sp9_F_contig11244.1070.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11244:265..2204+ (Ectocarpus species9 EcSCA_722f female)
GGGGAGTGGGTCGCGGTGCTGACGGCGCTTGTGGCCATGGCGGTGGAGAC
GCACACCCTGAACCACTTCTTCTCGGACGCGGAGCAGCGGTGCGAGAACC
TGAGGAAGAAGGCCGTGTCGGGGACGAAGATGAGCACCAGGTCTTTCCAG
GGGGAGTGGGTCGCGGTGCTGACGGCGCTTGTGGCCATGGCGGTGGAGAC
GCACACCCTGAACCACTTCTTCTCGGACGCGGAGCAGCGGTGCGAGAACC
TGAGGAAGAAGGCCGTGTCGGGGACGAAGATGAGCACCAGGTCTTTCCAG
GGGATGCTTCTGAGCGTGGGGGGCAACGGTGCGGTGGAGTTCTGGCAGCG
GCTGATGAAGAGTGTAGACGGCGAGATGGACGCGGTTAAGAACTGCGCCG
ACGAGGACGATGATGAGGGGATGCTTCTGAGCGTGGGGGGCAACGGTGCG
GTGGAGTTCTGGCAGCGGCTGATGAAGAGTGTAGACGGCGAGATGGACGC
GGTTAAGAACTGCGCCGACGAGGACGATGATGAGGAGGACGATGACTTCG
GCAAGACCCCCGGCGTGTGCATCGTTTGCTGGTGTCCCACCGCCCACATC
GATGCAAGCCAGGAGGACGATGACTTCGGCAAGACCCCCGGCGTGTGCAT
CGTTTGCTGGTGTCCCACCGCCCACATCGATGCAAGCCAGATCCTCATGT
GCGACGGGTGCCAGATCCTCATGTGCGACGGGTGCCAG
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