mRNA_Ecto-sp9_F_contig11237.1063.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA2, (alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL8_ECTSI) HSP 1 Score: 420 bits (1080), Expect = 3.730e-146 Identity = 205/224 (91.52%), Postives = 211/224 (94.20%), Query Frame = 1
Query: 7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKASGERGKRRVYYEAV 678
+VVDQDA+GLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQP+YVATPQDILHIRIRSSGIVVDKY IDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYF SSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEK + ++ Y V
Sbjct: 97 QVVDQDAIGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPEYVATPQDILHIRIRSSGIVVDKYRIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFKRSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKFNAANTAKKTVYHHV 320
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D1_9PHAE) HSP 1 Score: 421 bits (1081), Expect = 6.040e-146 Identity = 208/218 (95.41%), Postives = 210/218 (96.33%), Query Frame = 1
Query: 7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKA--SGERGK 654
+VVDQDAM LIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNS F SSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKA GE G+
Sbjct: 97 QVVDQDAMRLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSCFERSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKAIQRGEHGQ 314
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: G-protein (complex alpha subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U751_9STRA) HSP 1 Score: 263 bits (673), Expect = 2.130e-84 Identity = 126/227 (55.51%), Postives = 170/227 (74.89%), Query Frame = 1
Query: 7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGAC-TFDRGVSYFLEKASG--ERGKRRVYYEAV 678
+++DQDA+ LI ++ D ID K+G AI LW D IQKTW +RSE+Q++ES+KY+ + + I +P Y+A+ DIL+ R+R+SGIV ++Y IDGT FEMYDVGGQRNERKKWIHCFDNVTA+I+VAALSEY+Q +FED++TNRM EA+ LF+ IC+N +FA+SS++LFLNKKDLFAEK+ I ++SD+KG FD GV YF+ G +R ++ Y V
Sbjct: 99 EILDQDAIDLINTIPD-TDIDLKIGSAIKTLWKDDAIQKTWARRSEFQIVESVKYYFNKIDEISEPDYLASDDDILYARVRTSGIVTERYMIDGTMFEMYDVGGQRNERKKWIHCFDNVTAIIFVAALSEYDQVLFEDSSTNRMIEAIQLFKEICNNKFFANSSMLLFLNKKDLFAEKIWVKDIKGVPQFSDYKGCLGDFDAGVDYFVNLFLGVNDRPNEKIIYNHV 324
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUR0_9STRA) HSP 1 Score: 260 bits (665), Expect = 3.560e-83 Identity = 121/204 (59.31%), Postives = 159/204 (77.94%), Query Frame = 1
Query: 19 QDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGAC-TFDRGVSYFL 627
++A+ I L+D A ID +VGQA+ LW DP I KTW++R+E+Q++ES+KY+ + + RIMQP Y+A QD+L+ R+R+SGIV ++Y IDG+ FEMYDVGGQRNERKKWIHCFD+VTAVI+VAALSEY+Q +FEDA+TNRM EA+ LF IC+N YF +SS+ILFLNK+DLFAEK+ I ++DF G F+ GV YFL
Sbjct: 103 KEALKKISLLDDNADIDMEVGQAVKDLWSDPGILKTWDRRAEFQIVESVKYYFNEIDRIMQPDYLANQQDVLYARVRTSGIVTERYMIDGSIFEMYDVGGQRNERKKWIHCFDDVTAVIFVAALSEYDQSLFEDASTNRMVEAIELFAEICNNRYFHNSSMILFLNKRDLFAEKIMVKDIKQVSHFNDFPGGLGDFELGVQYFL 306
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU9_9STRA) HSP 1 Score: 258 bits (660), Expect = 1.910e-82 Identity = 124/227 (54.63%), Postives = 162/227 (71.37%), Query Frame = 1
Query: 7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACT-FDRGVSYFLEK--ASGERGKRRVYYEAV 678
++ DQ + ++ ED AP+D ++G A+ A+W D +QKTW +R+EYQ++ESM Y+LD + RI P YVA D+LH+RIRSSG+VVD+Y IDG TFEMYDVGGQRNERKKWIHCFDNVTA+IYVAALSEY+QG++EDA TNRM EA++LF+ I N +F SS+ILFLNKKDLF K+ I +SD+ G + G +YFL+K A + VY+
Sbjct: 98 EIEDQTSAEMLTYCEDTAPVDAELGAAVKAVWADAAVQKTWFRRNEYQIVESMSYYLDSIDRISAPDYVADINDVLHVRIRSSGVVVDRYTIDGFTFEMYDVGGQRNERKKWIHCFDNVTAIIYVAALSEYDQGLYEDAQTNRMVEAISLFREIAHNPFFIHSSLILFLNKKDLFEAKVKVRNIADVPHFSDYGGPRSDHAAGTTYFLKKFLAHARSEDQAVYHHVT 324
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV5_9STRA) HSP 1 Score: 258 bits (659), Expect = 2.700e-82 Identity = 118/222 (53.15%), Postives = 162/222 (72.97%), Query Frame = 1
Query: 22 DAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKG-ACTFDRGVSYFLEKASGERG--KRRVYYEAV 678
DA ++S E+ A ID +G+A+ +W DP++Q WEK++EYQ++ES+K+F D + RI Y ATPQD+++ R+R++GIV D+Y IDGTTFEMYDVGGQRNERKKWIHCFDNVTAV++VA++SEY+Q +FEDANTNR+ EA+ LF C+N YF SSSIIL LNK+DL+ K+ IN + D+ G A D G+ YF++K ++G K+ +Y V
Sbjct: 103 DAFETVKSCEESAVIDPPLGKALKEVWNDPVVQGVWEKQAEYQIVESVKFFFDALDRISAADYTATPQDMVYTRVRTTGIVTDRYVIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVLFVASISEYDQSLFEDANTNRVNEALTLFADTCNNKYFQSSSIILLLNKRDLYEAKVKKVAINSVPAFKDYSGPAKDVDAGIKYFMDKFLAQKGSFKKDIYVHVV 324
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP05_ECTSI) HSP 1 Score: 257 bits (657), Expect = 5.420e-82 Identity = 124/218 (56.88%), Postives = 163/218 (74.77%), Query Frame = 1
Query: 34 LIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDR-GVSYFLEK--ASGERGKRRVYYEAV 678
L+ ED A ID ++GQAI +W DP + + WE+R+EYQ++ES+KYF + M RI Q +VAT QD+L+ R+R+SGIV ++Y IDG+TFEMYDVGGQRNERKKWIHCFDNVTAVI+VAALSEY+Q +FEDA+TNRMTEA++LF IC+N +F+ SS+ILFLNKKDLFAEK+ I ++W+DF G + G +YFL + +R VY+
Sbjct: 107 LVVDCEDSAAIDMELGQAIQDVWSDPAMLRVWERRAEYQIVESVKYFFNEMERIKQDDFVATQQDVLYSRVRTSGIVTERYEIDGSTFEMYDVGGQRNERKKWIHCFDNVTAVIFVAALSEYDQCLFEDASTNRMTEAMDLFNEICNNRFFSESSMILFLNKKDLFAEKIQRVDIKSVEKWADFTGEPRDEEAGKAYFLSLFLKVNQNPEREVYHHVT 324
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE70_9STRA) HSP 1 Score: 251 bits (642), Expect = 1.030e-79 Identity = 117/221 (52.94%), Postives = 165/221 (74.66%), Query Frame = 1
Query: 25 AMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGA-CTFDRGVSYFLEKASGERG--KRRVYYEAV 678
A +++ +D A ID ++G+A+ A+W DP++Q+ WEK++E+Q+ ES+KYF D M RI P Y ATPQD+++ R+R++GIV D+Y IDGTTFEMYDVGGQRNERKKWIHCFD VTAV++VA+LSEY+Q +FEDA+TNR+TEA++LF C+N YF +SSIILFLNK+DLF K+ I + DF G + + G+ YF++K ++G ++ +Y V
Sbjct: 105 AFDTVKTCDDTAVIDTELGKALKAVWQDPVVQRVWEKQAEFQIEESVKYFFDDMDRISGPGYTATPQDMVYTRVRTTGIVTDRYVIDGTTFEMYDVGGQRNERKKWIHCFDAVTAVLFVASLSEYDQKLFEDASTNRVTEALSLFADTCNNKYFHNSSIILFLNKRDLFEAKVLKVSIKSIPSFIDFGGPEQSAEAGIKYFMDKFLAQKGAFRKDIYVHVV 325
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: Heterotrimeric (G protein alpha subunit 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8C6_THAPS) HSP 1 Score: 245 bits (626), Expect = 2.850e-77 Identity = 119/226 (52.65%), Postives = 164/226 (72.57%), Query Frame = 1
Query: 7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACT----FDRGVSYFLEK--ASGERGKRRVY 666
+V+ +D + S++DQ I+E++G I ALW DP + TW++R+E+Q++ES+KY+ + + RIMQ YVAT QD+L R+R+SGIV +KY IDG FEMYDVGGQRNERKKWIHCFD+VTAVI+VAALSEY+Q +FEDA+TNRM EAV+LF IC+N +F +S++ILFLNKKDL+ EK+ I ++ F G +D+G+ YFL+ +R+VY
Sbjct: 99 EVIAKDKFDFMLSVDDQCEINEEIGLTIKALWTDPGVLMTWKRRAEFQIVESVKYYFNEIERIMQDDYVATQQDMLLARVRTSGIVTEKYVIDGVDFEMYDVGGQRNERKKWIHCFDDVTAVIFVAALSEYDQALFEDASTNRMVEAVDLFGEICNNKFFDTSAMILFLNKKDLYEEKIKNVHIGDQPAFAAFGGNIGDEDYYDKGIQYFLDMFLEQNTNPERQVY 324
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY4_9STRA) HSP 1 Score: 241 bits (616), Expect = 8.410e-76 Identity = 114/206 (55.34%), Postives = 153/206 (74.27%), Query Frame = 1
Query: 10 VVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGAC-TFDRGVSYF 624
VV Q+A +++ ++ A ID +G A+ ALW DP I WE+RSE+Q++ES+K++ + RIMQP Y+ + QD+L+ R+R+SGIV ++Y ID TTFEMYDVGGQRNERKKWIHCFD+VTAVI+V+ALSEY+Q +FEDA TNRM EA+ LF IC+N YF SS+ILFLNKKDL+ +K+ I +SDF G ++G+ YF
Sbjct: 99 VVAQEAFHTVKATDEAAVIDVALGTALKALWVDPGILGVWERRSEFQIVESVKFYFGELDRIMQPDYLPSQQDVLYARVRTSGIVTERYEIDSTTFEMYDVGGQRNERKKWIHCFDDVTAVIFVSALSEYDQSLFEDATTNRMVEAIELFGEICNNRYFQDSSMILFLNKKDLYEDKIKKVDIKSIDAFSDFPGGLGDAEKGIEYF 304 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11237.1063.1 >prot_Ecto-sp9_F_contig11237.1063.1 ID=prot_Ecto-sp9_F_contig11237.1063.1|Name=mRNA_Ecto-sp9_F_contig11237.1063.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=217bp MGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLback to top mRNA from alignment at Ecto-sp9_F_contig11237:324..3950- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11237.1063.1 ID=mRNA_Ecto-sp9_F_contig11237.1063.1|Name=mRNA_Ecto-sp9_F_contig11237.1063.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3627bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11237:324..3950- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11237:324..3950- >mRNA_Ecto-sp9_F_contig11237.1063.1 ID=mRNA_Ecto-sp9_F_contig11237.1063.1|Name=mRNA_Ecto-sp9_F_contig11237.1063.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1302bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11237:324..3950- (Ectocarpus species9 EcSCA_722f female)back to top |