mRNA_Ecto-sp9_F_contig1006.99.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1006.99.1
Unique NamemRNA_Ecto-sp9_F_contig1006.99.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: ELMO (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID1_9PHAE)

HSP 1 Score: 586 bits (1510), Expect = 2.210e-202
Identity = 292/306 (95.42%), Postives = 298/306 (97.39%), Query Frame = 1 
Query:  169 MSLAKKGRKAIRAFTRLMRRIVKWLLRKLTAQSEIGRILRSDGYSSELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRLAWCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDGWASLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTWLYEAIVKHMPAGALPVNEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQRSNARFPPLVDAD 1086
            MSLAKK R+A+RAFTRLMRRIVKWLLRKLTAQSEIGRILRSDG+SSELVQ IAQSI RSSS+EMERVKRAV GKAPFDVTSTCDELMAAKAIGDEHKPRL WCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDGWA LGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDT LYEAIVKHMPAG LPV+EEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQRSNAR+PPLVDAD
Sbjct:    1 MSLAKKSRRAVRAFTRLMRRIVKWLLRKLTAQSEIGRILRSDGHSSELVQVIAQSIGRSSSTEMERVKRAVLGKAPFDVTSTCDELMAAKAIGDEHKPRLTWCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDGWAPLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTSLYEAIVKHMPAGTLPVDEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQRSNARYPPLVDAD 306
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: Similar (to ELMO domain-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA1_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 5.120e-106
Identity = 169/175 (96.57%), Postives = 172/175 (98.29%), Query Frame = 1 
Query:  169 MSLAKKGRKAIRAFTRLMRRIVKWLLRKLTAQSEIGRILRSDGYSSELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRLAWCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDGWASLGFQNGDKPETDFRGMGLLG 693
            MSLAKKGRKA+RAFTRLMRRIVKWLLRKLTAQSEIGRILRSDGYSSELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRL WCLQVLNIVNIIHEKVESLQHTNYDPD+ THVALLETLWTSLQPDARRT+GWA LGFQNGDKPETDFRGMGLLG
Sbjct:    1 MSLAKKGRKAVRAFTRLMRRIVKWLLRKLTAQSEIGRILRSDGYSSELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRLTWCLQVLNIVNIIHEKVESLQHTNYDPDEPTHVALLETLWTSLQPDARRTNGWAPLGFQNGDKPETDFRGMGLLG 175
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA0_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 3.850e-48
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:  826 MLEQRRLDTWLYEAIVKHMPAGALPVNEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQRSNARFPPLVDAD 1086
            MLEQRRLDT LYEA+VKHMP G LPV+EEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQRSNARFPPLVDAD
Sbjct:    1 MLEQRRLDTSLYEAVVKHMPEGTLPVDEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQRSNARFPPLVDAD 87
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: ELMO (domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G872_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.700e-35
Identity = 99/305 (32.46%), Postives = 155/305 (50.82%), Query Frame = 1 
Query:  163 VTMSLAKKGRKAIRAFTRLMRRIVKWLLRKLTAQSEIGRILRS-DGYSSELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRL-----AWCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDG-----WASLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTWLYEAIVKHMPAGALPVNEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIK 1044
            V  ++AK+     R +  L +++ KW+      QSE+ R+ R  +     +  A  +S    S   M +  R VF    F+V   C+E+  A  I D +  RL      W L   N VN +++K+ SL+  +Y   +  H  +LE LWT+L+P  RR  G     W  +GFQ  D P TDFRGMG+L L QL++F      EA  +L +S +P  ++PF+  GIN+TAF   ++++R +D  +Y+      P+       +  +  GL   +  Y D +  F++ W ES P+  MAFP +F T+K
Sbjct:    6 VRSNVAKQLSLIDRLWRYLHKQVCKWIF----GQSELQRLARKCESLDLNVQMARFRSCLALSKHLMAQCDR-VFDPRTFEVEQVCEEIAVADGI-DTNDIRLMQTLRGW-LHRCNYVNAVYQKLFSLRDESYTSQNEMHERMLEELWTNLKPQTRRAHGRITKEWGEIGFQGVD-PMTDFRGMGILSLIQLLYFTSKYPVEASALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDMKIYQYAETSDPS-------KHGIDNGLDAMHEFYCDVFTSFNKLWKESNPEDAMAFPSVFQTLK 295
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J2E0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.670e-33
Identity = 89/241 (36.93%), Postives = 130/241 (53.94%), Query Frame = 1 
Query:  349 SSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRLAW----CLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDG-----WASLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTWLYEAIVKHMPAGALPVNEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIK 1044
            S++M +    VF   PF + +T  ++ A +A  DE    L      CLQ  N VN ++ +V +L++  Y      H  LLE LWT+L+PD RR  G     W  +GFQ  D P +DFRGMGL  L QL+ FA+    EA   L +S +P R++PFA  GIN+TAF   ++++R LD  LY    +H        N++  V +GL   + VY   +  F++ W ++ P   MAFP IF ++K
Sbjct:   66 SAQMVQACNVVFDNEPFPMDATLHDV-ATRAKLDERDATLMTNVRSCLQRCNFVNKVYARVYALKNEAYSSSKPEHEELLEQLWTNLKPDVRREGGRITKEWGEIGFQGTD-PMSDFRGMGLFSLVQLIHFAKGYKIEAQRALEESNHPTRWYPFAVTGINVTAFMIELIDERLLDIKLY----RHA------ANDD--VDSGLKQLHDVYATIFTRFNKLWVDTNPRDVMAFPSIFQSLK 292
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: ELMO (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4G9_GLOUD)

HSP 1 Score: 139 bits (350), Expect = 1.490e-31
Identity = 93/299 (31.10%), Postives = 155/299 (51.84%), Query Frame = 1 
Query:  190 RKAIRAFTRLMRRIVKW----LLRKLTAQSEIGRILRSDGYS-SELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRLA---WCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDG-----WASLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTWLYEAIVKHMPAGALPVNEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQ 1047
            R+A R     +RRI +W    L + L  QSE+ RI    G    E  + +    + + S+ + ++  AVF    F + +   E++   ++  ++   +A    CL   N VN ++ +V +L+   +D  +A H  +LE LW++L+P+ RR+ G     W  +GFQ  D P +DFRGMG+  L+QL+ F      EA   LA+S +P R++PF+  GINIT+F   ++ +R +D  LY+    ++  G    N+      GL   + +Y   +  F++ W +S P   MAFP IF  +K+
Sbjct:    8 RRAARKNEGFVRRIWRWVKNALWQVLFGQSEVQRICTPTGNQVDEQSRIVRFRTSLALSNALVKICNAVFDFEAFPMEAILTEMIKRLSLDAKNTSLIANVRGCLDRCNYVNRVYNRVHALRDEAFDSKNAKHEEMLEQLWSNLKPNVRRSGGRITKEWGEIGFQGTD-PMSDFRGMGIFSLYQLLHFTGNYPVEAQAALAESNHPTRWYPFSVTGINITSFIIELINERLVDFKLYK--FANLQRGT---NDSSNEDDGLEALHELYSTIFTRFNKLWVDSNPRDVMAFPTIFNALKK 300
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: ELMO (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTB3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.990e-31
Identity = 90/262 (34.35%), Postives = 127/262 (48.47%), Query Frame = 1 
Query:  376 AVFGKAPFDVTSTCDELMAAKAIGDEHKPRLAW---CLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDG-----WASLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTWLYEAIVKHMPAGALPVNEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQ-----------RSNARFPPLVDAD*MTG*W 1104
            AVF    F V +T   ++   A+  +    +A    CL   N VN ++ +   L+   Y   D  H ALLE LW +L+P+ RR+ G     W  +GFQ  D P++DFRGMG+L L QLV F+     EA   LA+S +P R++PF+  GINIT F   ++ +R +D  LY       PA A     E     G+   + +Y   +  F++ W +S P   MAFP IF T+K            RS   +P    AD   G W
Sbjct:  553 AVFDFEEFPVDATLSAMVTKAALNPQDSTLMAGVRACLHRCNFVNRVYARTHQLRDEAYSSVDDRHEALLEQLWDNLKPNVRRSGGRITKEWGEIGFQGTD-PKSDFRGMGILSLQQLVHFSVKYPVEAHAALAESNHPTRWYPFSVTGINITGFMIELINERLVDVKLYALANAQDPAAA----HEQATEQGVAALHELYCTLFTRFNKLWVDSNPRDVMAFPTIFQTLKTAVRSELVQRSFRSEQVWPRRRGADARRGVW 809
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: ELMO (domain-containing protein n=5 Tax=Poeciliinae TaxID=586240 RepID=M4ACX9_XIPMA)

HSP 1 Score: 134 bits (337), Expect = 5.630e-31
Identity = 100/281 (35.59%), Postives = 138/281 (49.11%), Query Frame = 1 
Query:  232 VKWLLRKLTAQSEIGRILRSDGYSSELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRLAWCLQ--VLNIVNI--IHEKVESLQHTNYDPDDATHVALLETLWTSLQPDA----RRTDGWASLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTWLYEAIVKHMPAGALPVNEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQR 1050
            +K++ RK T + E+ RI   +   +     I  S+ R S  E+ R   +V    P  V  T D++MA K I  +  P+L   LQ  +L IV    +  +VE L+   YD ++A H ++L  LW  L+PD     R +  W  +GFQ  D P+TDFRGMGLLGL  L++FAE     AL +L DS+ PK  + FA  GINIT    ++L    L T LY             V  EM   AGL  F  ++     EF RFW E +P   M F  +     +R
Sbjct:   24 LKFVTRKFTGRCELQRICYGNKPGARRTLKIESSL-RYSKYELLRSALSVH---PDQVEKTIDDIMALKKINPDTNPQLGVSLQASLLQIVGYRSLMAEVEKLRREPYDSENAEHESMLMKLWKELRPDTPLTGRISKQWCEIGFQGND-PKTDFRGMGLLGLQNLLYFAEHDRAAALQMLQDSLQPKHKYSFAIVGINITDLAYSLLVSGALKTHLYN------------VAPEM---AGLQHFQQIFCYLMQEFQRFWIEEDPSDIMEFNRVRSKFHRR 284
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: Uncharacterized (protein AlNc14C53G4139 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBU8_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.510e-30
Identity = 78/232 (33.62%), Postives = 121/232 (52.16%), Query Frame = 1 
Query:  379 VFGKAPFDVTSTCDELMAAKAIGDEHKPRL-----AWCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDG-----WASLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTWLYEAIVKHMPAGALPVNEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIK 1044
            +F      V    +E+  A  I D++  RL      W L   + VN +++K+ +L+   Y   +  H  +LE LWT+L+P  RR  G     W+ +GFQ  D P TDFRGMG+L L QL++F      EA  +L +S +P  ++PF+  GIN+TAF   ++++R +D  +Y+      P+  +  N       GL   +  Y D +  F++ W ES P+  MAFP IF  +K
Sbjct:   74 IFDLKTLKVDQVSEEIAVADGI-DKNNIRLMQTLRGW-LHRCDYVNSVYQKLLALRDEPYASHNKVHERMLEELWTNLKPQTRRAHGRITKEWSEIGFQGMD-PMTDFRGMGVLSLVQLLYFTSKYPVEAQALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDIKIYQYADISDPSRDVMDN-------GLDAIHEFYCDVFTSFNKLWKESNPEDAMAFPSIFQALK 295
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Match: ELMO (domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y6B6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.810e-30
Identity = 94/293 (32.08%), Postives = 141/293 (48.12%), Query Frame = 1 
Query:  208 FTRLMRRIVKWLLRKLTAQSEIGRIL-RSDGYSSELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKA-------IGDEHKPRLAWCLQVLNIVNIIHEKVESLQHTNYDPDDATH-VALLETLWTSLQPDARRTDG-----WASLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTWLYEAIVKHMPAGALPVNEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIK 1044
            + R +R +  +       Q EI RI  R+ G    ++  +  S+A     E+ER + A+FG   F+     + +M AK        IGD +   L  CLQ    VN ++  + +L++  YD  +  H VA+LE LW +L+PD RR+ G     W  +GFQ  D P TDFR MG+L LHQL ++ +    EA   L  S +P +++PFA  GINIT F   +++ R LD+ +++                    A +   +  Y   +  F   W ES P   MAFP IF  +K
Sbjct:   18 WARCIRAVQNFFFLVFFGQCEIQRICTRATGDKRGMMVRVRTSVALDP--ELERAQAAIFGFDAFEPAPVMEGIMQAKRFTFANDKIGDAN---LRECLQKFRAVNEVYHDLIALKNEAYDSTNDLHEVAMLEELWNNLKPDVRRSGGRHTKEWGEIGFQGTD-PMTDFRSMGILSLHQLNYYTKNYAEEARRALVHSNHPTQWYPFAVTGINITNFLYELIQDRLLDSRMFDK------------------DADIKELHEFYCSVFSMFDALWVESNPTDLMAFPTIFNHLK 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1006.99.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ELMO2.210e-20295.42domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Similar5.120e-10696.57to ELMO domain-containing protein 1 n=1 Tax=Ectoca... [more]
Uncharacterized3.850e-4894.25protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
ELMO1.700e-3532.46domain-containing protein n=1 Tax=Albugo candida T... [more]
Uncharacterized2.670e-3336.93protein n=1 Tax=Phytophthora aleatoria TaxID=24960... [more]
ELMO1.490e-3131.10domain-containing protein n=1 Tax=Globisporangium ... [more]
ELMO2.990e-3134.35domain-containing protein n=1 Tax=Pythium brassicu... [more]
ELMO5.630e-3135.59domain-containing protein n=5 Tax=Poeciliinae TaxI... [more]
Uncharacterized3.510e-3033.62protein AlNc14C53G4139 n=1 Tax=Albugo laibachii Nc... [more]
ELMO6.810e-3032.08domain-containing protein n=1 Tax=Achlya hypogyna ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1006contigEcto-sp9_F_contig1006:20632..26845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.9
Seed ortholog evalue2e-89
Seed eggNOG ortholog2880.D7FIA1
Preferred nameELMOD1
KEGG koko:K14821
GOsGO:0000278,GO:0000281,GO:0000910,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007049,GO:0008047,GO:0008150,GO:0009987,GO:0022402,GO:0022603,GO:0030234,GO:0030695,GO:0031347,GO:0031974,GO:0031981,GO:0032101,GO:0032991,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043547,GO:0043900,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048583,GO:0050688,GO:0050789,GO:0050790,GO:0050793,GO:0051239,GO:0051301,GO:0051336,GO:0051345,GO:0060589,GO:0061640,GO:0065007,GO:0065009,GO:0070013,GO:0080134,GO:0090175,GO:0098772,GO:1903047,GO:1905330,GO:2000026,GO:2000027
EggNOG free text desc.ELMO domain-containing protein
EggNOG OGsKOG2998@1,KOG2998@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionsimilar to ELMO domain-containing protein 1
Ec32 orthologEc-11_001130.1
Exons5
Model size2574
Cds size921
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928198.377914-UTR-Ecto-sp9_F_contig1006:20631..207991622928198.377914-UTR-Ecto-sp9_F_contig1006:20631..20799Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1006 20632..20799 +
1692277791.7376893-UTR-Ecto-sp9_F_contig1006:20631..207991692277791.7376893-UTR-Ecto-sp9_F_contig1006:20631..20799Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1006 20632..20799 +
1622928198.4487758-UTR-Ecto-sp9_F_contig1006:25360..268451622928198.4487758-UTR-Ecto-sp9_F_contig1006:25360..26845Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1006 25361..26845 +
1692277791.7977557-UTR-Ecto-sp9_F_contig1006:25360..268451692277791.7977557-UTR-Ecto-sp9_F_contig1006:25360..26845Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1006 25361..26845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928198.3914373-CDS-Ecto-sp9_F_contig1006:20799..211141622928198.3914373-CDS-Ecto-sp9_F_contig1006:20799..21114Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 20800..21114 +
1692277791.7494748-CDS-Ecto-sp9_F_contig1006:20799..211141692277791.7494748-CDS-Ecto-sp9_F_contig1006:20799..21114Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 20800..21114 +
1622928198.4034612-CDS-Ecto-sp9_F_contig1006:21749..219571622928198.4034612-CDS-Ecto-sp9_F_contig1006:21749..21957Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 21750..21957 +
1692277791.757172-CDS-Ecto-sp9_F_contig1006:21749..219571692277791.757172-CDS-Ecto-sp9_F_contig1006:21749..21957Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 21750..21957 +
1622928198.4158094-CDS-Ecto-sp9_F_contig1006:23494..235991622928198.4158094-CDS-Ecto-sp9_F_contig1006:23494..23599Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 23495..23599 +
1692277791.7698882-CDS-Ecto-sp9_F_contig1006:23494..235991692277791.7698882-CDS-Ecto-sp9_F_contig1006:23494..23599Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 23495..23599 +
1622928198.4273925-CDS-Ecto-sp9_F_contig1006:24192..243511622928198.4273925-CDS-Ecto-sp9_F_contig1006:24192..24351Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 24193..24351 +
1692277791.779072-CDS-Ecto-sp9_F_contig1006:24192..243511692277791.779072-CDS-Ecto-sp9_F_contig1006:24192..24351Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 24193..24351 +
1622928198.4369168-CDS-Ecto-sp9_F_contig1006:25226..253601622928198.4369168-CDS-Ecto-sp9_F_contig1006:25226..25360Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 25227..25360 +
1692277791.7866185-CDS-Ecto-sp9_F_contig1006:25226..253601692277791.7866185-CDS-Ecto-sp9_F_contig1006:25226..25360Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1006 25227..25360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1006.99.1prot_Ecto-sp9_F_contig1006.99.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1006 20800..25360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1006.99.1

>prot_Ecto-sp9_F_contig1006.99.1 ID=prot_Ecto-sp9_F_contig1006.99.1|Name=mRNA_Ecto-sp9_F_contig1006.99.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=307bp
MSLAKKGRKAIRAFTRLMRRIVKWLLRKLTAQSEIGRILRSDGYSSELVQ
AIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRL
AWCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRT
DGWASLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINP
KRYFPFAAAGINITAFTTTMLEQRRLDTWLYEAIVKHMPAGALPVNEEML
VAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQRSNARFP
PLVDAD*
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mRNA from alignment at Ecto-sp9_F_contig1006:20632..26845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1006.99.1 ID=mRNA_Ecto-sp9_F_contig1006.99.1|Name=mRNA_Ecto-sp9_F_contig1006.99.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6214bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1006:20632..26845+ (Ectocarpus species9 EcSCA_722f female)
CTCGGCGGGTTCCACTACTGCGTTGAGGTCCGTCACCGGGAGTGAGTGGG
GGAGAGAGAGAGAGAGAGCGAGACGAAGCTGAACCCCCTCCTCATCTGTT
CTCATCTGGTGTGTGTCAGCGTAGCAAGGGCTGGGCATCGCGGGTTTGTG
TTGCGAGCGTGTGTGACCATGTCGTTGGCGAAAAAGGGCAGAAAGGCGAT
TCGTGCTTTCACGAGGCTGATGCGCCGTATCGTGAAATGGCTGCTCCGCA
AGCTCACGGCGCAGTCAGAGATAGGTAGAATACTGCGGAGCGATGGGTAC
TCTAGTGAGCTCGTGCAGGCAATTGCACAATCGATTGCAAGGAGCTCGAG
CTCCGAAATGGAACGGGTGAAGAGAGCCGTGTTTGGGAAGGCCCCTTTCG
ATGTGACGTCAACTTGTGACGAACTCATGGCGGCGAAGGCGATCGGGGAT
GAGCACAAGCCTCGGTTGGCATGGTGTCTGCAGGTGAGGTCCTCACCCTA
ACGACGACGCATATTTCGCGCATCGGCTGTCGGGTGAGCCTTTGCCTAGA
CTTGCATCGACGCTCTTTTAGATTGTGAAAGTCGGCAGGTGGGGGTAATT
GTATCTAAATGTCGTGCTCTTGTCTCCGCTGCCGCCACCGCCTCGTTGTC
ACTGGTTCTTGTTGGTGCGCAGACTTCTTCGTACTCGCACTCGCAAGGGC
TACGTGATTCGGTCTTGTTGGCTGGCGAATAAGCGCCCAATAAGGTGGTT
ACGTGCTACCAGGATGGCCCACTACCTACCTGGCCATGACAGCCAGCTAG
CAACTTTCGGTCCACTTTCGACCACCAGGCGACACTGGCGGTGTTTTGTG
TTGCTTGCCCGGGCTGGAAATTGATTACTTGCTTCTTTTCTTGGATGTGT
ATGCATACAACAGAGAGATAGAATAAGAATCCAGCCCATTGCCTCTGACC
TCGGACCTATCCATACCGCCGCCTTGTCTTGCGTTCCTCACGCACCCCTC
CCTCTCTTCACGCCACACCACGTGCTCTGGCGGGTGAGGGTGCGCTATGA
TAAATGGATGCAAACATGAACCTAATCTCAATACTTCTGTCGTTGTCCGT
CCCCCACAATAATGTCAGGTCCTCAACATCGTCAACATAATCCATGAGAA
GGTTGAAAGTCTCCAACACACCAACTACGACCCGGACGACGCGACGCACG
TTGCTCTCCTCGAGACACTATGGACCTCCCTACAACCTGATGCGCGTCGC
ACGGATGGTTGGGCCTCCCTAGGATTCCAAAATGGAGACAAACCAGAAAC
GGATTTTCGCGGAATGGGTTTGCTAGGTGAGACCGCGCGGTTGTGAGAGA
TATTCACTTCAACTACGTCAGCAAGCGAGTCACAGAGGCTGCCGGCTGCA
CCGGTGAACCAAGTAGTGCCGGGGCCCAAAAGAAAAATGTTGGTTCGTGG
TGTATCTGATTCACGTGGCGACATAAGGTGTCGAATCTCCGCTACTGACG
GAAACTTTGTGCAGCTCCTGTTACCCGGACGAGTCTCATTGTACTTCTGG
TTTGCAGGCAAGAGATCAGGCTGGTATCCAGCGAAGTGACGTCGCTGGTG
TGTATGTGTGCATGTTCGTCCCATCTCTTCTGCTGTCTGACGCCAGTCTA
CACATTCCGGTGCATATCGGTGTTACGTATTACGTCTATGTTTGACGTTT
CAACCAGCGTCCCACACGAGGAAGGTCACACAGGAGTTGTTTTTTTTTTT
GCCCCAAATCTTCTGGTGCTTGCCTTAGTTCTTGTATTTGTCGCGAGAAG
GAGTCAGCCGTCCGCTTCCCTCGTCGACCGTGCAGTCAACGTGTGTTAAC
TCACGAACTACAATAGACCCCCTTTTAGAATACTCGCTTTTGCACGGCAA
ATTGCAAAATATTTCTGAAACTCGCCACCTGCTACTAGATTTACGACGTC
ATCTACTTTTTATACTAGAGTAGACCATCGGGGCGACCGTACGGAATCCT
GAAGTTTGAATCCATCAAGTTCAGTCAAATGAAATGTACGCAGCACTGCT
GTAAGCGAGAGACGACAGACGAGAGACGCACTGGGGGCCCGAGGGCGTCA
CTTCTTGACAACTTCTGTGCTCCGTTCTTCAACTATTGTGCTCTTACTTC
TGTAGTTTTGAAGGGGTTGCACGCCGCACCAGCCCTTCCAGCGTTTCCCC
TGTCTCTCAAACCACCATGCGTGCGTACCCTGACCGAAGGCGATACTAAT
GTCATGTGTTGTATGCGTAGCGAGATGTCGTACATCCGTCCTGGCTCGGT
TTTCCGGTCGATAGAGCGTGTGCAATCGAACGGTGAAGCACGCTGGCTGC
GACAGCAGCACTGTTCCGTCCATTCAGACGGGACAACACTGTTAGGCCCT
TTCAGCGGGACCCGCGTGTTCTTTTTCATTGATTCATTTTCCACATTGTG
GCCATAATAACATAAAAACGTGCGTCGTCCCAAGGTCTGCGCATGTAGAC
TACATGTACGCTATTTAGCTTAGAACGCACCTACAGCAGTAGTGCCGACA
GCTGGGGTTAGAGGTGATGAGATCCACGAAATTGTCATGATTATTTGCAC
CATCTATTCTTCTATGAAGACGGAGGAGTTTGTCGCACACACGACACGCG
GACCTGTATTAATAGACGGCTCATGTTTGGCGTGACCTCGAAATGCGTGT
AGATGTCAACACAGGGGGCATCATAAGATTTTTTTTGAGGAAAGGTCGGC
CGGTGGAGGTGAAGTTTTAAGGGAGTCAAACAAAACGTGGTGCAGACGCG
CGGTACCTCGGAAGGATTTTTCACACGTGCCTCTTGACTGGTTTATTCGG
CATTTTATCTCAGGTCTGCACCAGCTCGTGTTTTTCGCAGAGGCACGGAA
TCGGGAGGCGCTCTGCATACTGGCGGACTCAATCAACCCGAAGCGATACT
TCCCCTTCGCTGCCGCAGGTGCGGTTTCCAATAGATGACGTTAGATGCCG
TGTGTTGTTGTGCGTGTTGTCAACCGGCATGCCTTGAGAGTGACGAAACG
TTGACACCAAGCATGCAGAGCTACTGGCCTGGTGTTCCCGGTGACTCGCT
GAGTCCTCAGGCGAGGTCTTGATCGCTGAATCGCTGCACGCGCCCTTAGC
AAACGAGAGGCCCATGCATCGATCGCCAATCGTTTGTGCTGTAATGAGCG
AGAGAGACTGCCAAGGATGGTGAAAGTATGATACTGCTGTTACGTATTTT
ACTGGTTGGACCACCTTGGGGTTTCCACTGTCGACTACGGTACTGTAGGA
ACATCGGTCGGGGGTGGAAAACGCGAACATACGGTGCTTTCAAATGAGCG
GGGCAGAACAGCACCTTGCCATTACCCTCGTTGTGGCAATCTTACATATA
GCGACACCATCAAATGTAGGAACTGAACCCAACACGAAGGAAAATCAAGA
GGACGATACCAAAATCGTCAGATTGTACCCGTCGAATTGTGACATTGGTT
TAGTCCGGGCAAGACACATCGTGGTGACATCCTAACGCAGCGGGTACTCG
AATTTTGGCAGGGATCAACATTACCGCCTTCACAACAACCATGCTCGAGC
AGAGGCGCCTCGACACCTGGCTGTACGAAGCTATTGTAAAACACATGCCT
GCGGGAGCACTACCAGTGAATGAGGAAATGCTCGTGGCAGCAGGTCTCAC
CGGCTTCAATCATGTTTACGGTGAGAGATTTGTGCTTAGTCGTGTGTTCT
TCATGGGTTAATCTCCACCGGCCCATAAAAATACACAGCGTACAAGAACG
TGCGGTTGACATTCTGACTGATTAGAATGTACGAAGCCTTTGCACGCCTT
GCTCTGTCTGGCATGGCCACAGAGTACCTTGTCCACCGGACGGGTCACAT
GCGTCGTAAGTGCACCCCAGGCGCACGATACGCTAGGTACGGTTTCAAGA
AGTAGAAGGTAAATGGCGGCTTGGTTTTGGCAATTCTGGGGTACAGCACA
TGGGTGCAGGAAACGCAGAAGAAACAGAACAGAAAGCACAAGATTCGCAG
CCACCTTGGGGCTAGCGTTTCGTCATGTCAGTGCATACTGCCGACTACCG
TTCTTTCGGTCCCTGTTCTCTTTGTTTTTTCAGACACCGCGCGATGCGCT
CTGCGTGAAGACGTTGCTACATTACCTATCATTTCTCCTATCTAGCAGAT
TCCACGTGGTTTCCAGTAAGGGGCGTTGTGGTGTGTGGCAGTGGCATGGA
TAGTTTTCGGTCCATGTGGCCAAAGATCAGAGGAGCTGCTGGTATCCCTA
CCCTTATGCGACGATGCGTTTAAGCACAGGACTCGGCTGGGGTACCGTAC
AGGCTTAACTCTGTCATCGACAAATATTTCGGTGATGATATGAAGTGGGA
CCAGGAAAAACGAAACCTCTCGTCTTCAACAACAACTGGCGCGTGGTGGA
GCTTGTTGCGTGTAGAAAGGGCTCGTTTCGAGGACCTACATTTATAGCCC
GAAATAAGAAAGCGTAGCGATTCTGGTGTTGTGTTATTTCGTGCTCGGTA
CTCGAATCCTAATATCACCGTAAAACTGTGCTGCAAATGCTCCAGGAGAC
GAGTACGTGGAGTTCTCCCGCTTCTGGCACGAGTCGGAGCCCGACAGCAC
AATGGCGTTCCCCGGCATTTTTGGGACGATCAAGCAGCGATCAAACGCGA
GATTTCCACCTCTGGTGGATGCGGACTGAATGACTGGTTGATGGTGACAA
GTCCGCAGTTTCTTTCGCCTTGTGTGCATTACCCGTGATGAAACAGTTTT
CGATTTCTGATTATATAGTTGCGGCGCACTCGAATGCTGTAGTTCAAGAA
CCGTGTATGGTTCGGGTGTTGACTGTATCCTGTAGTAAGTTTTTTTTTTA
ATGTGTCATTTCCGTCTTCCCCGGCGTGGGTGGTGTGAGGCAGGTGCCAC
CATAGCGTGCACCCGACAGTACGTTGAATGCAGTTCGTATTTAGTGTGGT
ATGAATGCTAAAACATTTTTTTCGAAGTGCACTCCTTGCCATTTCTCCAC
CCGAATTTTTTTGTGCGAATGGATTTTTTTCCCCTCTTTCGTGGGCGAGG
AAATCACCCGCTTGGAAGAGGAGTTGATTGTACCGCGCTTCTGTGGTGAA
GCTGCAAGTGTAAACAATTGTCACTTACTTCTATTTAATATGGTATTATT
CCTGTATTTGCCGCGGCTATCGAAGTTAAATAGATCCGATTTAGTACAGG
TGTAAGAGTGCCGTTTTAAGAGTGGGGGAAGAGGAGACAACAGGGGCCCG
CGTTGGCTAGCATTATATATGGTTCGTTGATATCGTGTTTACAAGGGACT
GGTATATAGTAGTATTACGATACGGAGTTGTGAGTGCGTTGCAGTAGTGT
ATGGAACAACTGTTCCCGTAGGTATGTGTTTTCTTGGTTTTGGGCGAGAA
GGGGTGTGCGATGAGGTGGCTTCAAGGCAAAGCTTGTTAGGTTCACCGCA
GAAGTAGTTTTGTCGGCAGTGTCATGATACAGTATTTGTTCAAAGAAAGC
AGCGGTCCGGACCGCAGTCGCTTGGTTGATTATTTTGAGTCTTCTTGTTG
AATGCGCCCTTTTGGAGGAGAGGTCCCGCCAAGCACTAGGCACCATGTGT
GGATATAGCTCTCAGTTACTGCCTTTTGCCGCGGGAGGCCGAAGGCTTTC
TTGTGTTGTGTGCATATCGAGTCCCAACTCCTGGAACTCCAGTAGAAGAA
AAATGTTGCAGAGGAGTTGTGGTGAAGCGAGGCGGTGTTGAACAACTCCT
TCTTCGTGGAATCGAAGAATTATTTTATGAGCTGTCCAAAAGGTATAAAC
CAGCAGTTACGTGTTGTGGTCGGCGCCAGTATTTTGTAGCTTGTGACAAC
CTCGGAACCGTCAATAGGTGAGCGGGCCCACCCGGTGTGTTGAAGATTGT
ACCTGGCTTTCTTAAGTCCACATTTAAGCAGTATTTTGATCGGTGATACT
CCTCATCTGCCGCGGCTCTCGCAACAAACTACAGTAAGCACGTATCTGTT
GTGATGCCGCAGCCGATGTCCCACGGAATGGAGACCTGTTGATGGTGTGG
GTGTGCTCGTCCCATGTGTTCTGGCTCCAGTCTGCTGCACACCTCTCGGT
GTAAATATTTTTACCCCACCTTCCTGCTGCAGAACTCGCCGTGTGGTTTT
TATCTCGAGAAGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1006:20632..26845+

>mRNA_Ecto-sp9_F_contig1006.99.1 ID=mRNA_Ecto-sp9_F_contig1006.99.1|Name=mRNA_Ecto-sp9_F_contig1006.99.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1842bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1006:20632..26845+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGTTGGCGAAAAAGGGCAGAAAGGCGATTCGTGCTTTCACGAGGCT
GATGCGCCGTATCGTGAAATGGCTGCTCCGCAAGCTCACGGCGCAGTCAG
AGATAGGTAGAATACTGCGGAGCGATGGGTACTCTAGTGAGCTCGTGCAG
GCAATTGCACAATCGATTGCAAGGAGCTCGAGCTCCGAAATGGAACGGGT
GAAGAGAGCCGTGTTTGGGAAGGCCCCTTTCGATGTGACGTCAACTTGTG
ACGAACTCATGGCGGCGAAGGCGATCGGGGATGAGCACAAGCCTCGGTTG
GCATGGTGTCTGCAGATGTCGTTGGCGAAAAAGGGCAGAAAGGCGATTCG
TGCTTTCACGAGGCTGATGCGCCGTATCGTGAAATGGCTGCTCCGCAAGC
TCACGGCGCAGTCAGAGATAGGTAGAATACTGCGGAGCGATGGGTACTCT
AGTGAGCTCGTGCAGGCAATTGCACAATCGATTGCAAGGAGCTCGAGCTC
CGAAATGGAACGGGTGAAGAGAGCCGTGTTTGGGAAGGCCCCTTTCGATG
TGACGTCAACTTGTGACGAACTCATGGCGGCGAAGGCGATCGGGGATGAG
CACAAGCCTCGGTTGGCATGGTGTCTGCAGGTCCTCAACATCGTCAACAT
AATCCATGAGAAGGTTGAAAGTCTCCAACACACCAACTACGACCCGGACG
ACGCGACGCACGTTGCTCTCCTCGAGACACTATGGACCTCCCTACAACCT
GATGCGCGTCGCACGGATGGTTGGGCCTCCCTAGGATTCCAAAATGGAGA
CAAACCAGAAACGGATTTTCGCGGAATGGGTTTGCTAGGTCCTCAACATC
GTCAACATAATCCATGAGAAGGTTGAAAGTCTCCAACACACCAACTACGA
CCCGGACGACGCGACGCACGTTGCTCTCCTCGAGACACTATGGACCTCCC
TACAACCTGATGCGCGTCGCACGGATGGTTGGGCCTCCCTAGGATTCCAA
AATGGAGACAAACCAGAAACGGATTTTCGCGGAATGGGTTTGCTAGGTCT
GCACCAGCTCGTGTTTTTCGCAGAGGCACGGAATCGGGAGGCGCTCTGCA
TACTGGCGGACTCAATCAACCCGAAGCGATACTTCCCCTTCGCTGCCGCA
GGTCTGCACCAGCTCGTGTTTTTCGCAGAGGCACGGAATCGGGAGGCGCT
CTGCATACTGGCGGACTCAATCAACCCGAAGCGATACTTCCCCTTCGCTG
CCGCAGGGATCAACATTACCGCCTTCACAACAACCATGCTCGAGCAGAGG
CGCCTCGACACCTGGCTGTACGAAGCTATTGTAAAACACATGCCTGCGGG
AGCACTACCAGTGAATGAGGAAATGCTCGTGGCAGCAGGTCTCACCGGCT
TCAATCATGTTTACGGGATCAACATTACCGCCTTCACAACAACCATGCTC
GAGCAGAGGCGCCTCGACACCTGGCTGTACGAAGCTATTGTAAAACACAT
GCCTGCGGGAGCACTACCAGTGAATGAGGAAATGCTCGTGGCAGCAGGTC
TCACCGGCTTCAATCATGTTTACGGAGACGAGTACGTGGAGTTCTCCCGC
TTCTGGCACGAGTCGGAGCCCGACAGCACAATGGCGTTCCCCGGCATTTT
TGGGACGATCAAGCAGCGATCAAACGCGAGATTTCCACCTCTGGTGGATG
CGGACTGAGAGACGAGTACGTGGAGTTCTCCCGCTTCTGGCACGAGTCGG
AGCCCGACAGCACAATGGCGTTCCCCGGCATTTTTGGGACGATCAAGCAG
CGATCAAACGCGAGATTTCCACCTCTGGTGGATGCGGACTGA
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