mRNA_Ecto-sp9_F_contig11102.959.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11102.959.1
Unique NamemRNA_Ecto-sp9_F_contig11102.959.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11102.959.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11102contigEcto-sp9_F_contig11102:1384..2484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size428
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928350.9261894-CDS-Ecto-sp9_F_contig11102:1383..15771622928350.9261894-CDS-Ecto-sp9_F_contig11102:1383..1577Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11102 1384..1577 +
1692277842.022495-CDS-Ecto-sp9_F_contig11102:1383..15771692277842.022495-CDS-Ecto-sp9_F_contig11102:1383..1577Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11102 1384..1577 +
1622928350.943959-CDS-Ecto-sp9_F_contig11102:2251..24831622928350.943959-CDS-Ecto-sp9_F_contig11102:2251..2483Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11102 2252..2483 +
1692277842.0320473-CDS-Ecto-sp9_F_contig11102:2251..24831692277842.0320473-CDS-Ecto-sp9_F_contig11102:2251..2483Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11102 2252..2483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11102.959.1prot_Ecto-sp9_F_contig11102.959.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11102 1384..2483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11102.959.1

>prot_Ecto-sp9_F_contig11102.959.1 ID=prot_Ecto-sp9_F_contig11102.959.1|Name=mRNA_Ecto-sp9_F_contig11102.959.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=142bp
SRSSAVLFHQQRTPISRIKGASQGDEGERESSPATLSSPRKCRSEPSAFR
QPRLHRRSMEHLFERCVGSAAPVAVLAEALWRAEENRSENMCRAAVIEAP
APMRTTRDEAAGAKPKEANVCINRKINAGHLPEAGQAPVIVT
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mRNA from alignment at Ecto-sp9_F_contig11102:1384..2484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11102.959.1 ID=mRNA_Ecto-sp9_F_contig11102.959.1|Name=mRNA_Ecto-sp9_F_contig11102.959.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1101bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11102:1384..2484+ (Ectocarpus species9 EcSCA_722f female)
TCCCGTTCCTCTGCTGTGCTTTTTCACCAACAAAGGACTCCCATCTCAAG
GATTAAAGGCGCGTCACAGGGAGACGAAGGTGAGCGAGAGAGCTCGCCAG
CAACCCTTAGTAGCCCGCGAAAATGCCGCAGTGAACCTTCCGCATTTCGA
CAACCTCGATTGCATCGCAGATCAATGGAGCACCTGTTCGAGAGGTGAGG
CTGCTGTAGGGAGCGACGCGCACATCGACGGCAGCGAGACACAGAGACAC
CAATGGCATATGGGTGACTAGCTCAGTGCGTTTTCCCAGACCACATATTT
TCCAAAGTGTTACTGACAAAGTTCCCAAGCAAAGTTGCAGAACAACTTGT
AGCATTCTCCAGCCAAAAAGAGCGGTGATTTCCAAACCTGAAATCTTGAG
CGAACTGTACGTACACAAGTACGGCAGTTAGACTAGTTGCGACTTAGGTT
GCGCAAGACATCACGCACCCTGGACCGATTTTCAATGCTGGAATATTCGA
TAGAAAAAGCAGTAACGGTGCCGAAAATGTATGGTACGTTCTAAAAAAGA
AAATGGGGGCGTTCTTCGGGCCTTCTCGTCAAGAACTTTCCGAAAACGTA
TTGTTTGGTTTTGGCATCCTCTTCCTCGTGGAGTAATCGCGCTTTGAAAA
ATCGGTCCGGGGGGTGTGGTATCTTACGCAATCAACGGTTTTCTTTACAC
GCAAAGTCCGGCTGCGGCAGTTGGTTCAACACACCAAATCACGTCTATAA
CGCCGTCGCACCAGGTTGTTCACTGCCCACTACACCACCATCTCGAGCCC
TCTCCAACCCATACTTGTGTCAGGCAACATTACACTGCTCTGTCCCATTC
TGATGGTTCGGCCTGCAGATGCGTAGGAAGCGCAGCACCAGTAGCAGTTC
TGGCGGAAGCGTTGTGGCGTGCGGAAGAAAATCGAAGCGAAAACATGTGT
CGCGCCGCGGTCATCGAAGCTCCAGCACCAATGCGAACAACAAGAGACGA
GGCAGCAGGGGCCAAGCCAAAGGAGGCAAACGTGTGCATAAATCGAAAAA
TCAATGCCGGACATCTACCCGAGGCAGGTCAGGCACCAGTAATCGTAACA
A
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11102:1384..2484+

>mRNA_Ecto-sp9_F_contig11102.959.1 ID=mRNA_Ecto-sp9_F_contig11102.959.1|Name=mRNA_Ecto-sp9_F_contig11102.959.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11102:1384..2484+ (Ectocarpus species9 EcSCA_722f female)
TCCCGTTCCTCTGCTGTGCTTTTTCACCAACAAAGGACTCCCATCTCAAG
GATTAAAGGCGCGTCACAGGGAGACGAAGGTGAGCGAGAGAGCTCGCCAG
CAACCCTTAGTAGCCCGCGAAAATGCCGCAGTGAACCTTCCGCATTTCGA
CAACCTCGATTGCATCGCAGATCAATGGAGCACCTGTTCGAGAGTCCCGT
TCCTCTGCTGTGCTTTTTCACCAACAAAGGACTCCCATCTCAAGGATTAA
AGGCGCGTCACAGGGAGACGAAGGTGAGCGAGAGAGCTCGCCAGCAACCC
TTAGTAGCCCGCGAAAATGCCGCAGTGAACCTTCCGCATTTCGACAACCT
CGATTGCATCGCAGATCAATGGAGCACCTGTTCGAGAGATGCGTAGGAAG
CGCAGCACCAGTAGCAGTTCTGGCGGAAGCGTTGTGGCGTGCGGAAGAAA
ATCGAAGCGAAAACATGTGTCGCGCCGCGGTCATCGAAGCTCCAGCACCA
ATGCGAACAACAAGAGACGAGGCAGCAGGGGCCAAGCCAAAGGAGGCAAA
CGTGTGCATAAATCGAAAAATCAATGCCGGACATCTACCCGAGGCAGGTC
AGGCACCAGTAATCGTAACAATGCGTAGGAAGCGCAGCACCAGTAGCAGT
TCTGGCGGAAGCGTTGTGGCGTGCGGAAGAAAATCGAAGCGAAAACATGT
GTCGCGCCGCGGTCATCGAAGCTCCAGCACCAATGCGAACAACAAGAGAC
GAGGCAGCAGGGGCCAAGCCAAAGGAGGCAAACGTGTGCATAAATCGAAA
AATCAATGCCGGACATCTACCCGAGGCAGGTCAGGCACCAGTAATCGTAA
CA
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