mRNA_Ecto-sp9_F_contig1110.955.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1110.955.1
Unique NamemRNA_Ecto-sp9_F_contig1110.955.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1110.955.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1110contigEcto-sp9_F_contig1110:2051..2378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928350.404686-CDS-Ecto-sp9_F_contig1110:2050..23771622928350.404686-CDS-Ecto-sp9_F_contig1110:2050..2377Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1110 2051..2377 +
1692277841.829362-CDS-Ecto-sp9_F_contig1110:2050..23771692277841.829362-CDS-Ecto-sp9_F_contig1110:2050..2377Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1110 2051..2377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1110.955.1prot_Ecto-sp9_F_contig1110.955.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1110 2051..2377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1110.955.1

>prot_Ecto-sp9_F_contig1110.955.1 ID=prot_Ecto-sp9_F_contig1110.955.1|Name=mRNA_Ecto-sp9_F_contig1110.955.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=109bp
AIRALPGRFSSHPVMVVGHPLLCGVGVPSLRELGRAQHACCCCCAAAAAV
SWRGRPPQKTRHAVYSAASGEKRKSTARPVMVAPVPFRAVVRVESVGGTV
AAPPPHKQA
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mRNA from alignment at Ecto-sp9_F_contig1110:2051..2378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1110.955.1 ID=mRNA_Ecto-sp9_F_contig1110.955.1|Name=mRNA_Ecto-sp9_F_contig1110.955.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=328bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1110:2051..2378+ (Ectocarpus species9 EcSCA_722f female)
GCCATCCGGGCGCTGCCAGGTCGTTTCTCCAGTCACCCTGTTATGGTAGT
AGGCCACCCCCTGCTCTGTGGTGTGGGTGTCCCATCCCTCCGCGAGCTCG
GCCGTGCCCAACATGCCTGCTGCTGCTGCTGTGCTGCTGCTGCTGCTGTG
TCGTGGAGAGGCAGGCCCCCGCAAAAAACGCGGCACGCTGTGTATTCGGC
CGCTTCGGGTGAAAAGAGGAAGTCAACTGCCCGACCGGTGATGGTCGCCC
CTGTGCCTTTTAGAGCTGTGGTCCGTGTTGAGAGTGTCGGTGGGACAGTA
GCAGCACCACCGCCCCACAAGCAGGCGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1110:2051..2378+

>mRNA_Ecto-sp9_F_contig1110.955.1 ID=mRNA_Ecto-sp9_F_contig1110.955.1|Name=mRNA_Ecto-sp9_F_contig1110.955.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1110:2051..2378+ (Ectocarpus species9 EcSCA_722f female)
GCCATCCGGGCGCTGCCAGGTCGTTTCTCCAGTCACCCTGTTATGGTAGT
AGGCCACCCCCTGCTCTGTGGTGTGGGTGTCCCATCCCTCCGCGAGCTCG
GCCGTGCCCAACATGCCTGCTGCTGCTGCTGTGCTGCTGCTGCTGCTGTG
TCGTGGAGAGGCAGGCCCCCGCAAAAAACGCGGCACGCTGTGTATTCGGC
CGCTTCGGGTGAAAAGAGGAAGTCAACTGCCCGACCGGTGATGGTCGCCC
CTGTGCCTTTTAGAGCTGTGGTCCGTGTTGAGAGTGTCGGTGGGACAGTA
GCAGCACCACCGCCCCACAAGCAGGCGGCCATCCGGGCGCTGCCAGGTCG
TTTCTCCAGTCACCCTGTTATGGTAGTAGGCCACCCCCTGCTCTGTGGTG
TGGGTGTCCCATCCCTCCGCGAGCTCGGCCGTGCCCAACATGCCTGCTGC
TGCTGCTGTGCTGCTGCTGCTGCTGTGTCGTGGAGAGGCAGGCCCCCGCA
AAAAACGCGGCACGCTGTGTATTCGGCCGCTTCGGGTGAAAAGAGGAAGT
CAACTGCCCGACCGGTGATGGTCGCCCCTGTGCCTTTTAGAGCTGTGGTC
CGTGTTGAGAGTGTCGGTGGGACAGTAGCAGCACCACCGCCCCACAAGCA
GGCG
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