mRNA_Ecto-sp9_F_contig111.952.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE) HSP 1 Score: 400 bits (1028), Expect = 1.030e-128 Identity = 313/342 (91.52%), Postives = 321/342 (93.86%), Query Frame = 1
Query: 163 PGDWECPSCGNNCFASRSECNRCQTPKPAGAGGGGGGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EGDWTCPSCGNNCFAFRQECNRCQTPKPGGDGGXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXX-REGDWTCPSCGNICFAFRNECNRCQTPKPNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RDNGREEEPAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQ----KRGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPSSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 1164
P WECPSCGNNCFASRSECNRCQTPKPAG GYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGDW CPSCGNNCFAFRQECNRCQTPKPGGDG XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX R+GDW CPSCGN CFAFRNECNRCQTPKP+GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RD+GREEEPAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLV+KFSTIGIIARIRQ KRGYKDQWPFSVRIYKD++TGKPKGDCIIKYEEP+SAHAA+RWFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct: 5 PPGWECPSCGNNCFASRSECNRCQTPKPAGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGDWACPSCGNNCFAFRQECNRCQTPKPGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGDWACPSCGNNCFAFRNECNRCQTPKPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDDGREEEPAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARASKRGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI) HSP 1 Score: 259 bits (661), Expect = 1.090e-77 Identity = 122/126 (96.83%), Postives = 126/126 (100.00%), Query Frame = 1
Query: 787 RDNGREEEPAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPSSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 1164
RD+GREEEPAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKD++TGKPKGDCIIKYEEP+SAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct: 33 RDHGREEEPAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ0_ECTSI) HSP 1 Score: 221 bits (563), Expect = 1.620e-62 Identity = 204/221 (92.31%), Postives = 205/221 (92.76%), Query Frame = 1
Query: 1 MSYYNNDGGGGGYGXXXXXXXXXXRXXXXYXXXXXXXXXXXXXXXXXXXXXNKRPGDWECPSCGNNCFASRSECNRCQTPKPAGAGGGGGGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDWTCPSCGNNCFAFRQECNRCQTPKPGGDGGXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXREGDWTCPSCGNICFAFRNECNRCQTPKPNG 663
MSYYNNDGGGGGYGXXXXXXXXXXRXXXX XXXXXXXXXXXXXXXX NKRPGDWECPSCGNNCFASRSECNRCQTPKPAGAGG Y XXXXX XXXXXXX XXXXXXXXXXXXXXX EGDWTCPSCGNNCFAFRQECNRCQTPKPGG+GGXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXREGDWTCPSCGNICFAFRNECNRCQTPKPNG
Sbjct: 1 MSYYNNDGGGGGYGXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXX-----NKRPGDWECPSCGNNCFASRSECNRCQTPKPAGAGGXXXXYXXXXXXYXXXXXXXYXXXXXXXXXXXXXXXREGDWTCPSCGNNCFAFRQECNRCQTPKPGGEGGXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXREGDWTCPSCGNICFAFRNECNRCQTPKPNG 216
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL5_9PHAE) HSP 1 Score: 156 bits (394), Expect = 2.350e-39 Identity = 133/182 (73.08%), Postives = 136/182 (74.73%), Query Frame = 1
Query: 154 NKRPGDWECPSCGNNCFASRSECNRCQTPKPAGAGGGGGGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE------------GDWTCPSCGNNCFAFRQECNRCQTPKPGGDGGXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXREGDWTCPSCGNICFAFRNECNRCQTPKPNG 663
N+RPGDWECPSCGNNCFASR ECNRCQTPKPAGAGGGG YG XXXXXXXXXXXXXXXXXXX XXXXX GDW CPSCGN+CFA R CNRC TP+P G GG XXXX XXXXXXXXXXXXXXXXXXXXX R GDW CPSCG CFA R ECNRC TPKP G
Sbjct: 50 NRRPGDWECPSCGNNCFASRVECNRCQTPKPAGAGGGG--YGERGXXXXXXXXXXXXXXXXXXXGYSXXXXXXXXXXXXXYNRRPGDWDCPSCGNHCFASRVVCNRCPTPRPEGAGGGFERGXXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCPSCGYNCFASRMECNRCHTPKPVG 229
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: Uncharacterized (protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA) HSP 1 Score: 146 bits (369), Expect = 7.000e-35 Identity = 109/217 (50.23%), Postives = 137/217 (63.13%), Query Frame = 1
Query: 571 REGDWTCPS--CGNICFAFRNECNRCQTPKPNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RDNGREEEPAG------------TEST---------CGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPSSAHAALRWFDGIDFKGGKIGVAMAAK 1143
R GDWTCP+ CGN+ FA R ECN+CQ PKP XXXXXXX XXXXXXXXXXXX XXXXXX R+ GR E G ES C ++CGD CDN R+Y+SGLP + E +L E F IG +ARI+QKRGYKDQWP++++IY+D ++GK KGD ++ YE+P +AH+A +F+ + +G KI VAMAAK
Sbjct: 88 RSGDWTCPNVTCGNVNFARRMECNKCQAPKPQSTGXXXXXXXGYGGEQXXXXXXXXXXXXNSYDEPGHXXXXXXXYDREQGRSHESRGGXXXXXYGAQSREESKDAVDVPVKQCDENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQKRGYKDQWPYNIKIYQD-ESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 303
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: Predicted (protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U3C2_PHYPA) HSP 1 Score: 146 bits (369), Expect = 1.090e-33 Identity = 109/217 (50.23%), Postives = 137/217 (63.13%), Query Frame = 1
Query: 571 REGDWTCPS--CGNICFAFRNECNRCQTPKPNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RDNGREEEPAG------------TEST---------CGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPSSAHAALRWFDGIDFKGGKIGVAMAAK 1143
R GDWTCP+ CGN+ FA R ECN+CQ PKP XXXXXXX XXXXXXXXXXXX XXXXXX R+ GR E G ES C ++CGD CDN R+Y+SGLP + E +L E F IG +ARI+QKRGYKDQWP++++IY+D ++GK KGD ++ YE+P +AH+A +F+ + +G KI VAMAAK
Sbjct: 88 RSGDWTCPNVTCGNVNFARRMECNKCQAPKPQSTGXXXXXXXGYGGEQXXXXXXXXXXXXNSYDEPGHXXXXXXXYDREQGRSHESRGGXXXXXYGAQSREESKDAVDVPVKQCDENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQKRGYKDQWPYNIKIYQD-ESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 303
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: Predicted (protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA) HSP 1 Score: 140 bits (354), Expect = 6.310e-33 Identity = 95/212 (44.81%), Postives = 123/212 (58.02%), Query Frame = 1
Query: 571 REGDWTC--PSCGNICFAFRNECNRCQTPKPNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNGREEEPAG-------------------TESTCGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPSSAHAALRWFDGIDFKGGKIGVAMAAK 1143
R GDWTC CGN+ FA R ECN+CQ KP XXXXXXXXX XXXXXXX R+ GR E G C ++CGD CDN R+Y+SGLP + E +L E F IG +AR++QKRGYKDQWP++++IY+D ++GK KGD ++ YE+P +AH+A +F+ + +G KI VAMAAK
Sbjct: 98 RSGDWTCLNAGCGNVNFARRMECNKCQASKPQSAAXXXXXXXXXREGGGNSYDEGXXXXXXXRGHD--------REQGRAYESRGGGYGAQPREDITVDGSKDVPVKQCDENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQKRGYKDQWPYNIKIYQD-ESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 300
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IL69_KLENI) HSP 1 Score: 139 bits (349), Expect = 2.410e-32 Identity = 105/222 (47.30%), Postives = 127/222 (57.21%), Query Frame = 1
Query: 571 REGDWTCP--SCGNICFAFRNECNRCQTPKP-----------------------------NGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNGREEEPAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPSSAHAALRWFDGIDFKGGKIGVAMAAK 1143
R+GDW CP SCGN FA R ECNRC TP+P G XXXXXXXXXXXXXXXXXXXX XX D G + PA + C CGD CDN R+Y+SGLP TE ++ E FS IG I RIRQKRGYKDQWP++++IY D D GK KGD ++ YE+P++AH+A +F+G +G K+ V MA K
Sbjct: 50 RDGDWICPNPSCGNNNFAKRTECNRCGTPRPAGGAAXXXXXXXXXXXXXXARESGYNDRGGGGFRSGGGDWSRPPESREXXXXXXXXXXXXXXXXXXXXSHXXXDGGDDSGPAVKQ--CDDKCGDSCDNARIYISGLPDNTTEDEIRELFSGIGQIGRIRQKRGYKDQWPWNIKIYTD-DAGKQKGDGVLTYEDPAAAHSAGGFFNGHSLRGSKLTVTMAQK 268
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI) HSP 1 Score: 131 bits (330), Expect = 4.460e-31 Identity = 57/104 (54.81%), Postives = 80/104 (76.92%), Query Frame = 1
Query: 832 CGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPSSAHAALRWFDGIDFKGGKIGVAMAAK 1143
C ++CGD CDN+R+Y+S LP + +L E F +IGI+ARI+QKRGYKDQWP+S+++Y D D+GK KGD ++ YE+PS+AH+A +F+G D +G KI V MA K
Sbjct: 102 CDENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQKRGYKDQWPYSIKLYTD-DSGKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 204
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Match: Uncharacterized (protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KUY0_CHABU) HSP 1 Score: 140 bits (352), Expect = 8.890e-31 Identity = 112/310 (36.13%), Postives = 144/310 (46.45%), Query Frame = 1
Query: 370 EGDWTCP--SCGNNCFAFRQECNRCQTPKPGGDGGXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXREGDWTCP--SCGNICFAFRNECNRCQTPKP----------------------------------NGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNGREEE----PAGTEST----------CGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPSSAHAALRWFDGIDFKGGKIGVAMAAK 1143
+GDW CP SC N+ FA R ECN+C P+P G XXXX XXXXXXXXXXXX R DWTCP SC N+ FA R ECN+C+TPKP +G R G E PAG + C CGD CDN R+Y+SGLP +T +L + F IG +ARI+QKRGYKDQWPF++++Y+D ++G+ KGD + YE+P +AH+A +F+ +G +I V MA K
Sbjct: 247 DGDWLCPNPSCANSNFARRTECNKCGAPRPAGX-------XXXXXXXXXXXXXXXXXYDDRRGGGAGGQRGEDWTCPNPSCNNLNFARRTECNKCRTPKPQGSGGSGDAYSGXXXXRYEDRGGYGXXXRGGDRVSGFSDSSRNGYADGRGQGGEGYGAPRTDTSSGYGSDHRGGSDHRSGGSSEYKSSGPAGDYKSGEVEPVKVKQCDAHCGDTCDNTRIYISGLPLDVTTDELRDLFGGIGQVARIKQKRGYKDQWPFNIKLYQD-ESGRNKGDGTLTYEDPQAAHSAGGFFNDHVIRGHQIKVTMAEK 548 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig111.952.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig111.952.1 >prot_Ecto-sp9_F_contig111.952.1 ID=prot_Ecto-sp9_F_contig111.952.1|Name=mRNA_Ecto-sp9_F_contig111.952.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=389bp MSYYNNDGGGGGYGGGGGYGGGGGRGGGGYGGGGYGGGGGGGGGGGRGGGback to top mRNA from alignment at Ecto-sp9_F_contig111:17303..27182+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig111.952.1 ID=mRNA_Ecto-sp9_F_contig111.952.1|Name=mRNA_Ecto-sp9_F_contig111.952.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=9880bp|location=Sequence derived from alignment at Ecto-sp9_F_contig111:17303..27182+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig111:17303..27182+ >mRNA_Ecto-sp9_F_contig111.952.1 ID=mRNA_Ecto-sp9_F_contig111.952.1|Name=mRNA_Ecto-sp9_F_contig111.952.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2334bp|location=Sequence derived from alignment at Ecto-sp9_F_contig111:17303..27182+ (Ectocarpus species9 EcSCA_722f female)back to top |