mRNA_Ecto-sp9_F_contig11097.949.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11097.949.1
Unique NamemRNA_Ecto-sp9_F_contig11097.949.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11097.949.1 vs.
Match: CS (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUA9_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 2.060e-67
Identity = 133/161 (82.61%), Postives = 134/161 (83.23%), Query Frame = -2 
Query:    2 LFRAATWVLPLVLADVAAAAAAAPTGPSVETSRLFEAETHHXXXXXXXXXPTSPRGGGRTFSPTDGGXXXXXXXXXXXXXXXSIRRRSNGQQRRSSGWLGWAPDARQHTRKPRLSGDLPAGFIASPTAALGQQGRGTRTCG-SSSGGHSPLRSFGGGREAG 481
            LFRAATWVLPLVLADVAAAAAAAPTGPSVETSRLFEAETHH XXXXXXXX     GGGRTFSP +GG               SIRRRSNGQQRRSSGWLGWAPDARQH RKPRLSGDLPAGFIASP AALGQQ RGTRTCG SSSGG SPLRSFGGGREAG
Sbjct:    4 LFRAATWVLPLVLADVAAAAAAAPTGPSVETSRLFEAETHHRXXXXXXXXXXXXSGGGRTFSPANGGGNGNGIASSRNKHEVSIRRRSNGQQRRSSGWLGWAPDARQHARKPRLSGDLPAGFIASPAAALGQQRRGTRTCGGSSSGGDSPLRSFGGGREAG 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11097.949.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
CS2.060e-6782.61domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11097contigEcto-sp9_F_contig11097:3563..4044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size484
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928349.3473594-UTR-Ecto-sp9_F_contig11097:3562..36751622928349.3473594-UTR-Ecto-sp9_F_contig11097:3562..3675Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11097 3563..3675 +
1692277841.2598653-UTR-Ecto-sp9_F_contig11097:3562..36751692277841.2598653-UTR-Ecto-sp9_F_contig11097:3562..3675Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11097 3563..3675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928349.3597114-CDS-Ecto-sp9_F_contig11097:3675..40441622928349.3597114-CDS-Ecto-sp9_F_contig11097:3675..4044Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11097 3676..4044 +
1692277841.2728972-CDS-Ecto-sp9_F_contig11097:3675..40441692277841.2728972-CDS-Ecto-sp9_F_contig11097:3675..4044Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11097 3676..4044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11097.949.1prot_Ecto-sp9_F_contig11097.949.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11097 3676..4044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11097.949.1

>prot_Ecto-sp9_F_contig11097.949.1 ID=prot_Ecto-sp9_F_contig11097.949.1|Name=mRNA_Ecto-sp9_F_contig11097.949.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=123bp
MNPAGKSPERRGFLVCCLASGAQPNQPLDLLCWPLDLRRMDTSSLLCEDA
TPLPFPPPSVGEKVRPPPRGDVGDGLCRRWWRWWVSASKRREVSTEGPVG
AAAAAAATSASTRGSTHVAARNS
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mRNA from alignment at Ecto-sp9_F_contig11097:3563..4044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11097.949.1 ID=mRNA_Ecto-sp9_F_contig11097.949.1|Name=mRNA_Ecto-sp9_F_contig11097.949.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=482bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11097:3563..4044+ (Ectocarpus species9 EcSCA_722f female)
CCCCCGCCTCCCTGCCTCCTCCAAAACTTCTCAACGGAGAGTGACCGCCG
CTGCTGCTGCCGCAAGTGCGCGTCCCTCGTCCCTGCTGTCCGAGCGCAGC
CGTCGGGCTCGCGATGAACCCGGCCGGTAAATCTCCAGAAAGGCGGGGTT
TTCTCGTGTGCTGTCTCGCGTCGGGTGCCCAACCCAACCAGCCGCTGGAT
CTTCTCTGCTGGCCGTTGGATCTTCGCCGGATGGATACCTCATCATTGTT
GTGCGAAGATGCTACGCCATTGCCATTTCCGCCACCATCGGTCGGAGAGA
AAGTTCGGCCGCCCCCGCGTGGGGACGTCGGTGATGGTCTCTGTCGTCGG
TGGTGGCGGTGGTGGGTTTCCGCTTCGAAGAGGCGGGAGGTCTCAACCGA
GGGCCCTGTGGGAGCAGCTGCTGCTGCAGCCGCTACGTCTGCTAGCACCA
GAGGGAGCACCCATGTTGCTGCTCGAAATAGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11097:3563..4044+

>mRNA_Ecto-sp9_F_contig11097.949.1 ID=mRNA_Ecto-sp9_F_contig11097.949.1|Name=mRNA_Ecto-sp9_F_contig11097.949.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11097:3563..4044+ (Ectocarpus species9 EcSCA_722f female)
ATGAACCCGGCCGGTAAATCTCCAGAAAGGCGGGGTTTTCTCGTGTGCTG
TCTCGCGTCGGGTGCCCAACCCAACCAGCCGCTGGATCTTCTCTGCTGGC
CGTTGGATCTTCGCCGGATGGATACCTCATCATTGTTGTGCGAAGATGCT
ACGCCATTGCCATTTCCGCCACCATCGGTCGGAGAGAAAGTTCGGCCGCC
CCCGCGTGGGGACGTCGGTGATGGTCTCTGTCGTCGGTGGTGGCGGTGGT
GGGTTTCCGCTTCGAAGAGGCGGGAGGTCTCAACCGAGGGCCCTGTGGGA
GCAGCTGCTGCTGCAGCCGCTACGTCTGCTAGCACCAGAGGGAGCACCCA
TGTTGCTGCTCGAAATAGCATGAACCCGGCCGGTAAATCTCCAGAAAGGC
GGGGTTTTCTCGTGTGCTGTCTCGCGTCGGGTGCCCAACCCAACCAGCCG
CTGGATCTTCTCTGCTGGCCGTTGGATCTTCGCCGGATGGATACCTCATC
ATTGTTGTGCGAAGATGCTACGCCATTGCCATTTCCGCCACCATCGGTCG
GAGAGAAAGTTCGGCCGCCCCCGCGTGGGGACGTCGGTGATGGTCTCTGT
CGTCGGTGGTGGCGGTGGTGGGTTTCCGCTTCGAAGAGGCGGGAGGTCTC
AACCGAGGGCCCTGTGGGAGCAGCTGCTGCTGCAGCCGCTACGTCTGCTA
GCACCAGAGGGAGCACCCATGTTGCTGCTCGAAATAGC
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