mRNA_Ecto-sp9_F_contig11093.947.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11093.947.1
Unique NamemRNA_Ecto-sp9_F_contig11093.947.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11093.947.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI92_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 9.270e-50
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 2 
Query:    2 LEAEAGASPPLLQVTPKLETQPSVRRWSARPSVSRQASMSPAVSSVDGQDRDAFSRASSPPPTRILTPARNSKAGAAAALSRAPSLRRWAVNSGGGGPG 298
            LEAEAGASPPLL+VTPKLETQPSVRRWSARPS SRQASMSPAVSSVDGQDRDAFSRASSPPP RILTPARNSKAGAAAALSRAPSLRRW VNS  GGPG
Sbjct:  228 LEAEAGASPPLLEVTPKLETQPSVRRWSARPSASRQASMSPAVSSVDGQDRDAFSRASSPPPIRILTPARNSKAGAAAALSRAPSLRRWVVNSSRGGPG 326
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BLAST of mRNA_Ecto-sp9_F_contig11093.947.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU1_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.100e-49
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 2 
Query:    2 LEAEAGASPPLLQVTPKLETQPSVRRWSARPSVSRQASMSPAVSSVDGQDRDAFSRASSPPPTRILTPARNSKAGAAAALSRAPSLRRWAVNSGGGGPGGPGEEDG 319
            L  EA ASPPLL+VTPKLETQPSVR+W AR SVSRQ SMSPAVSS+DGQDRDAFSRASSPPPTRILTPARNS AGAAAALSRAPSLRRWAVNSGGGGPGGP  EDG
Sbjct:  283 LNGEARASPPLLEVTPKLETQPSVRQWVARASVSRQVSMSPAVSSIDGQDRDAFSRASSPPPTRILTPARNSNAGAAAALSRAPSLRRWAVNSGGGGPGGPRGEDG 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11093.947.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.270e-5093.94protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.100e-4988.68protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11093contigEcto-sp9_F_contig11093:2243..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928349.2163546-CDS-Ecto-sp9_F_contig11093:2242..25631622928349.2163546-CDS-Ecto-sp9_F_contig11093:2242..2563Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11093 2243..2563 +
1692277841.1940866-CDS-Ecto-sp9_F_contig11093:2242..25631692277841.1940866-CDS-Ecto-sp9_F_contig11093:2242..2563Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11093 2243..2563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11093.947.1prot_Ecto-sp9_F_contig11093.947.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11093 2243..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11093.947.1

>prot_Ecto-sp9_F_contig11093.947.1 ID=prot_Ecto-sp9_F_contig11093.947.1|Name=mRNA_Ecto-sp9_F_contig11093.947.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=107bp
PRSRSGGFAAAPSSHAEVGDTAVGAAMVGAPECQPASLDVARRVFCRRPR
QRCVLARFEPTSNSHLDAREKLQGRGGRRALAGTVVAEVGGQQRRRRTGR
ARRGGRG
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mRNA from alignment at Ecto-sp9_F_contig11093:2243..2563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11093.947.1 ID=mRNA_Ecto-sp9_F_contig11093.947.1|Name=mRNA_Ecto-sp9_F_contig11093.947.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=321bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11093:2243..2563+ (Ectocarpus species9 EcSCA_722f female)
CCTCGAAGCAGAAGCGGGGGCTTCGCCGCCGCTCCTTCAAGTCACGCCGA
AGTTGGAGACACAGCCGTCGGTGCGGCGATGGTCGGCGCGCCCGAGTGTC
AGCCGGCAAGCCTCGATGTCGCCCGCCGTGTCTTCTGTCGACGGCCAAGA
CAGAGATGCGTTCTCGCGCGCTTCGAGCCCACCTCCAACTCGCATCTTGA
CGCCCGCGAGAAACTCCAAGGCCGGGGCGGCCGCCGCGCTCTCGCGGGCA
CCGTCGTTGCGGAGGTGGGCGGTCAACAGCGGCGGAGGAGGACCGGGAGG
GCCCGGCGAGGAGGACGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11093:2243..2563+

>mRNA_Ecto-sp9_F_contig11093.947.1 ID=mRNA_Ecto-sp9_F_contig11093.947.1|Name=mRNA_Ecto-sp9_F_contig11093.947.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11093:2243..2563+ (Ectocarpus species9 EcSCA_722f female)
CCTCGAAGCAGAAGCGGGGGCTTCGCCGCCGCTCCTTCAAGTCACGCCGA
AGTTGGAGACACAGCCGTCGGTGCGGCGATGGTCGGCGCGCCCGAGTGTC
AGCCGGCAAGCCTCGATGTCGCCCGCCGTGTCTTCTGTCGACGGCCAAGA
CAGAGATGCGTTCTCGCGCGCTTCGAGCCCACCTCCAACTCGCATCTTGA
CGCCCGCGAGAAACTCCAAGGCCGGGGCGGCCGCCGCGCTCTCGCGGGCA
CCGTCGTTGCGGAGGTGGGCGGTCAACAGCGGCGGAGGAGGACCGGGAGG
GCCCGGCGAGGAGGACGGGGGCCTCGAAGCAGAAGCGGGGGCTTCGCCGC
CGCTCCTTCAAGTCACGCCGAAGTTGGAGACACAGCCGTCGGTGCGGCGA
TGGTCGGCGCGCCCGAGTGTCAGCCGGCAAGCCTCGATGTCGCCCGCCGT
GTCTTCTGTCGACGGCCAAGACAGAGATGCGTTCTCGCGCGCTTCGAGCC
CACCTCCAACTCGCATCTTGACGCCCGCGAGAAACTCCAAGGCCGGGGCG
GCCGCCGCGCTCTCGCGGGCACCGTCGTTGCGGAGGTGGGCGGTCAACAG
CGGCGGAGGAGGACCGGGAGGGCCCGGCGAGGAGGACGGGGG
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