mRNA_Ecto-sp9_F_contig10998.863.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10998.863.1
Unique NamemRNA_Ecto-sp9_F_contig10998.863.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10998.863.1 vs.
Match: Telomerase (reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU0_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.090e-60
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:    1 CFFQIHRFEVTWLGLHTFREVFGAFAMKDRGFARCKLDVERALRETAGSRAGGFEGFSRKMRKGKEGAAAAGWEEGATPDTKHGVRRGRAYGRLRRVMHSPDALSLLQTLTS 336
            C  +IHR EVTWLGLH FREVFGAFAMKDRGFARCKLDVERALRETAGSR GGFEGFSRK+RKGKEGAAAAG EEGAT DT+HGVRRGRAYGRLRRV+ SPDALSLLQTLTS
Sbjct:  192 CVCKIHRSEVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKIRKGKEGAAAAGCEEGATSDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 303
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10998.863.1 vs.
Match: Telomerase (reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y0_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.610e-58
Identity = 95/112 (84.82%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:    1 CFFQIHRFEVTWLGLHTFREVFGAFAMKDRGFARCKLDVERALRETAGSRAGGFEGFSRKMRKGKEGAAAAGWEEGATPDTKHGVRRGRAYGRLRRVMHSPDALSLLQTLTS 336
            C  + HRF+VTW+GL  FREVFGAF MKDRGFARCKL VE ALRETAGSR GGFEGFSRK+RKGKEGAAAAGWEE ATPDT+HGVRRGRAYGRLRRV+ SPDALSLLQTLTS
Sbjct:  125 CVCKNHRFQVTWVGLPAFREVFGAFPMKDRGFARCKLHVESALRETAGSRGGGFEGFSRKIRKGKEGAAAAGWEEEATPDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 236
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10998.863.1 vs.
Match: Telomerase (reverse transcriptase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W1_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.470e-56
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 CFFQIHRFEVTWLGLHTFREVFGAFAMKDRGFARCKLDVERALRETAGSRAGGFEGFSRKMRKGKEGAAAAGWEEGATPDTKHGVRRGRAYGRLRRVMHSPDALSLLQTLTS 336
            C  +IHRFEVTWLGLH FREVFGAFA KDRGFARCKLDVERALRETAG   GGF+GFSRKM KGKEGAAAAGWE GATPDT+HGVRRGRAYGRLRRV+ SPDALSLLQTLTS
Sbjct:  561 CVCKIHRFEVTWLGLHAFREVFGAFARKDRGFARCKLDVERALRETAGFWGGGFDGFSRKMCKGKEGAAAAGWEGGATPDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 672
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10998.863.1 vs.
Match: Telomerase (reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G6_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.010e-55
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 1 
Query:    1 CFFQIHRFEVTWLGLHTFREVFGAFAMKDRGFARCKLDVERALRETAGSRAGGFEGFSRKMRKGKEGAAAAGWEEGATPDTKHGVRRGRAYGRLRRVMHSPDALSLLQTLTS 336
            C  +IHRFEVTWLGLH FREVFGAFAMKDRGFARCKLDVERALRETAGSR GGFEGFSRK+R+GKEGAAAAG EEGAT DT+HGVRRGRA+GRL+RV+ SPDALSLLQTLTS
Sbjct:  760 CVCKIHRFEVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKVRQGKEGAAAAGCEEGATSDTQHGVRRGRAHGRLQRVVRSPDALSLLQTLTS 871
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10998.863.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Telomerase1.090e-6089.29reverse transcriptase n=1 Tax=Ectocarpus siliculos... [more]
Telomerase1.610e-5884.82reverse transcriptase n=1 Tax=Ectocarpus siliculos... [more]
Telomerase1.470e-5687.50reverse transcriptase n=1 Tax=Ectocarpus sp. CCAP ... [more]
Telomerase1.010e-5587.50reverse transcriptase n=1 Tax=Ectocarpus siliculos... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10998contigEcto-sp9_F_contig10998:46..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue4.8e-49
Seed eggNOG ortholog2880.D7FGU0
Preferred nameTERT
KEGG koko:K10626,ko:K11126
KEGG Pathwayko05165,ko05166,ko05200,ko05225,ko05226,map05165,map05166,map05200,map05225,map05226
GOsGO:0000723,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010833,GO:0016043,GO:0018130,GO:0019438,GO:0032200,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0051276,GO:0060249,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.telomerase RNA reverse transcriptase activity
EggNOG OGsKOG1005@1,KOG1005@2759
EC2.3.2.27,2.7.7.49
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928331.4069884-CDS-Ecto-sp9_F_contig10998:45..3841622928331.4069884-CDS-Ecto-sp9_F_contig10998:45..384Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10998 46..384 +
1692277836.0092237-CDS-Ecto-sp9_F_contig10998:45..3841692277836.0092237-CDS-Ecto-sp9_F_contig10998:45..384Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10998 46..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10998.863.1prot_Ecto-sp9_F_contig10998.863.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10998 46..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10998.863.1

>prot_Ecto-sp9_F_contig10998.863.1 ID=prot_Ecto-sp9_F_contig10998.863.1|Name=mRNA_Ecto-sp9_F_contig10998.863.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=113bp
CFFQIHRFEVTWLGLHTFREVFGAFAMKDRGFARCKLDVERALRETAGSR
AGGFEGFSRKMRKGKEGAAAAGWEEGATPDTKHGVRRGRAYGRLRRVMHS
PDALSLLQTLTS*
back to top

mRNA from alignment at Ecto-sp9_F_contig10998:46..384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10998.863.1 ID=mRNA_Ecto-sp9_F_contig10998.863.1|Name=mRNA_Ecto-sp9_F_contig10998.863.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=339bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10998:46..384+ (Ectocarpus species9 EcSCA_722f female)
TGCTTTTTCCAGATCCACCGTTTCGAGGTGACCTGGCTTGGCCTCCACAC
CTTCAGGGAGGTGTTCGGCGCCTTCGCGATGAAGGACCGCGGGTTCGCCC
GCTGCAAGCTGGACGTGGAGAGAGCCCTCAGGGAAACTGCAGGTTCTCGG
GCAGGAGGCTTTGAAGGGTTCAGCAGAAAAATGCGCAAGGGCAAGGAGGG
TGCGGCCGCTGCAGGCTGGGAGGAGGGAGCGACCCCCGACACGAAGCATG
GGGTACGGCGCGGCAGGGCGTACGGCCGGCTTCGACGTGTCATGCACTCG
CCGGACGCGCTGTCGTTGCTGCAAACGCTCACGTCGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10998:46..384+

>mRNA_Ecto-sp9_F_contig10998.863.1 ID=mRNA_Ecto-sp9_F_contig10998.863.1|Name=mRNA_Ecto-sp9_F_contig10998.863.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10998:46..384+ (Ectocarpus species9 EcSCA_722f female)
TGCTTTTTCCAGATCCACCGTTTCGAGGTGACCTGGCTTGGCCTCCACAC
CTTCAGGGAGGTGTTCGGCGCCTTCGCGATGAAGGACCGCGGGTTCGCCC
GCTGCAAGCTGGACGTGGAGAGAGCCCTCAGGGAAACTGCAGGTTCTCGG
GCAGGAGGCTTTGAAGGGTTCAGCAGAAAAATGCGCAAGGGCAAGGAGGG
TGCGGCCGCTGCAGGCTGGGAGGAGGGAGCGACCCCCGACACGAAGCATG
GGGTACGGCGCGGCAGGGCGTACGGCCGGCTTCGACGTGTCATGCACTCG
CCGGACGCGCTGTCGTTGCTGCAAACGCTCACGTCGTAATGCTTTTTCCA
GATCCACCGTTTCGAGGTGACCTGGCTTGGCCTCCACACCTTCAGGGAGG
TGTTCGGCGCCTTCGCGATGAAGGACCGCGGGTTCGCCCGCTGCAAGCTG
GACGTGGAGAGAGCCCTCAGGGAAACTGCAGGTTCTCGGGCAGGAGGCTT
TGAAGGGTTCAGCAGAAAAATGCGCAAGGGCAAGGAGGGTGCGGCCGCTG
CAGGCTGGGAGGAGGGAGCGACCCCCGACACGAAGCATGGGGTACGGCGC
GGCAGGGCGTACGGCCGGCTTCGACGTGTCATGCACTCGCCGGACGCGCT
GTCGTTGCTGCAAACGCTCACGTCGTAA
back to top