mRNA_Ecto-sp9_F_contig1094.823.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1094.823.1 vs.
Match: PPR_long (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI) HSP 1 Score: 1212 bits (3137), Expect = 0.000e+0 Identity = 935/962 (97.19%), Postives = 943/962 (98.02%), Query Frame = 1
Query: 247 MRFKAMLGMRRPNAAKVDVTRVMQELRDEGVEFNLRTYRGCLAFLAKGGRGREALVYLEEMESAGVAADNACLGHVATACARGQMLDTALGMVRGMASKGHSVARTYNNIMLAIVNGQAFTSRTSS-RSNFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKNAMMRAVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANGVPRDEYTYCAAMNACKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWERAEQILVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMKSLMWGYNAAISALGKAKQMEGIKDLLATMKASGLKPDEYTYAAMMRASGIDGSWEESWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEGGVIAMQVYADGIRACCVKTRTIADDXXXXXXXXXX-NGEGVESEEGLVESSIEEAILDNAADSTPLRRAMSIFIEARQVYEGENIARLYAGILLACARDERAEGADAARNLLDEMRRSKFPPDKAAFGPAASALASAGDWEEAIEVLKEGAAMGALPNNIAYEDIRAAAHQEGQLKDANERLHEIIYPEVDPAAADASNTNE 3126
MRFKAMLGMRRPNAAKVDVTRVMQELRDEG EFNLRTYRGCLAFLAKGGRGREAL+YLEEMESAGVAADNACLGHVATACARGQMLDTAL MVRGM SKGHSVARTYNNIMLAIVNGQAFTSRTSS RS+FRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAAL RSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGP KNAMMRAVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFAN VPRDEYTYCAAMNACKE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSP QAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRG AGA XXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWERAEQ+LVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPM+SLMWGYNAAISALGKAKQMEGIKDL+ATMKASGLKPDEYTYAAMMRASGIDGSWEESWS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEGGVIAMQVYADGIRACCVKTRTIADD XXXXX XXX NGEGVESEEGLVESS+EEAILDNAADSTPLRRAMSIFIEARQVYEGENIARLYAGILLACARDERAEGADAARNLLDEMRRSKFPPDKA+FGPAASALASAGDW EAIEVLKEGAAMGALPNNIAYEDIRAAAHQEGQLK ANERLHEIIYPEVDP AADAS+TNE
Sbjct: 1 MRFKAMLGMRRPNAAKVDVTRVMQELRDEGAEFNLRTYRGCLAFLAKGGRGREALMYLEEMESAGVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSSRSSFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRGLAGADXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWERAEQMLVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEGGVIAMQVYADGIRACCVKTRTIADDDXXXXXGXXXXNGEGVESEEGLVESSLEEAILDNAADSTPLRRAMSIFIEARQVYEGENIARLYAGILLACARDERAEGADAARNLLDEMRRSKFPPDKASFGPAASALASAGDWGEAIEVLKEGAAMGALPNNIAYEDIRAAAHQEGQLKVANERLHEIIYPEVDPTAADASSTNE 962
BLAST of mRNA_Ecto-sp9_F_contig1094.823.1 vs.
Match: PPR_long (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE) HSP 1 Score: 1179 bits (3050), Expect = 0.000e+0 Identity = 931/1027 (90.65%), Postives = 945/1027 (92.02%), Query Frame = 1
Query: 1 MKDIAFGVRLSRSAGCGFWRATSNRLAAGGGNHVQQLHRPGQQQRHRRRACFSLSAAIAGDDAAPTVGKREAFSDNARTWGEMRFKAMLGMRRPNAAKVDVTRVMQELRDEGVEFNLRTYRGCLAFLAKGGRGREALVYLEEMESAGVAADNACLGHVATACARGQMLDTALGMVRGMASKGHSVARTYNNIMLAIVNGQAFTSRTSSRSNFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKNAMMRAVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANGVPRDEYTYCAAMNACKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWERAEQILVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMKSLMWGYNAAISALGKAKQMEGIKDLLATMKASGLKPDEYTYAAMMRASGIDGSWEESWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEGGVIAMQVYADGIRACCVKTRTIADDXXXXXXXXXX-----NGEGVESEEGLVESSIEEAILDNAADSTPLRRAMSIFIEARQVYEGENIARLYAGILLACARDERAEGADAARNLLDEMR----------------------------------RSKFPPDKAAFGPAASALASAGDWEEAIEVLK 2964
MKDIAFGVRLSRSAGCGFWRATSNRLA GG NHVQQLHRPGQQQ HRRRACFSLSA IAGDDAAPTVGK EAF DNART GEMRFKAMLGMRRPNAAKVDVTRVMQELRDEG EFNLRTYRGCLAFLAKGGRGREAL+YLEEMES GVAADNACLGHVATACARGQMLDTAL MVRGM SKGHSVARTYNNIMLAIVNGQAFTSRTSSRSNFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKN +MRAVLEDAKLEL+G+DLSAVYSAVVSGYAVDGSWEDASALVDEMFAN VPRDEYTYCAAMNACKE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSF+RPTST AEASDAGDFALGLM+EMKREGVEPDIITYGSLMSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDW+RAEQ+LVGMQK+H XXXXXXXXXXXXXXXXXXXXXXXXLETLD+MRECGLSADPV XXXXXXXXXXXXXXXXXXXXX KLVSEKPP +SLMWGYNAAISALGKAKQMEGIKDLLATMKASGLKPDEYTYAAMMRASGI+GSWEESW+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEGGVIAMQVYADGIRACCVKTRT XXXXXXXXXX EGVESEEGLVESSIE AILDNAADSTPLRRAMSIFIE VYEGENI RLYAGI LACARDERAEGADAARNLLDEMR RSKFPPDKA+FGPAASALASAGDWEEAIEVLK
Sbjct: 1 MKDIAFGVRLSRSAGCGFWRATSNRLATGGRNHVQQLHRPGQQQGHRRRACFSLSAVIAGDDAAPTVGKLEAFGDNARTLGEMRFKAMLGMRRPNAAKVDVTRVMQELRDEGAEFNLRTYRGCLAFLAKGGRGREALMYLEEMESVGVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSRSNFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKNVIMRAVLEDAKLELQGVDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFMRPTST------------AEASDAGDFALGLMDEMKREGVEPDIITYGSLMSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWKRAEQMLVGMQKDHGXXXXXXXXXXXXXXXXXXXXXXXXLETLDKMRECGLSADPVVXXXXXXXXXXXXXXXXXXXXXXKLVSEKPPKRSLMWGYNAAISALGKAKQMEGIKDLLATMKASGLKPDEYTYAAMMRASGIEGSWEESWTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEGGVIAMQVYADGIRACCVKTRTTXXXXXXXXXXXXXXXXXXKAEGVESEEGLVESSIEAAILDNAADSTPLRRAMSIFIE---VYEGENIGRLYAGIFLACARDERAEGADAARNLLDEMRYRGRILKGQRSSVGHQCRAMDIVGIFAFGGMIYRRSKFPPDKASFGPAASALASAGDWEEAIEVLK 1012
BLAST of mRNA_Ecto-sp9_F_contig1094.823.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 1.140e-6 Identity = 71/257 (27.63%), Postives = 104/257 (40.47%), Query Frame = 1
Query: 355 TYRGCLAFLAKGGRGREALVYLEEMESAGVAADNACLGHVATACARGQMLDTALGMVRGMASKGHSVARTYNNIMLAIVNGQAFTSRTSSRSNFRRTAL----SNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVK-----GIQGPNKNAMMRAVLEDAKLELEGLDLSAV------YSAVVSGYAVDGSWEDASALVDEMFANGVPRDEYTYCAAMNACKE 1080
T+R L A+ G G A V LEEM AG+A D + ATA R + + + A +G ++A T +L QA R L S++ G++ + G V Y L + A RS R HSE L +L+ + DG D + +K G G + AV + LEG+ + ++ + Y + G WEDA AL+ A DE YC+ +NA E
Sbjct: 737 TFRLGLTAAAEAGDGPAAAVLLEEMRDAGIAMDESAFHLAATAFGRAGLWRQGVRVAVVAAEQGIALAPTTLTSILGACAKQARWREALGLLQGTRPVLQQGLSSLPLSTGAGVVAGNERRGEGNVVAAYTLAMVACRRSGR-HSEGLRVLEMLEEDGGVGDEAFFRVALKCCAKAGGVGERGDCSGAAVADRV---LEGMSAQGIRCGVEGFTDIAQAYGLAGRWEDALALLPRAAALAAVPDERMYCSVINAMGE 989 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1094.823.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1094.823.1 >prot_Ecto-sp9_F_contig1094.823.1 ID=prot_Ecto-sp9_F_contig1094.823.1|Name=mRNA_Ecto-sp9_F_contig1094.823.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1043bp MKDIAFGVRLSRSAGCGFWRATSNRLAAGGGNHVQQLHRPGQQQRHRRRAback to top mRNA from alignment at Ecto-sp9_F_contig1094:3599..18918- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1094.823.1 ID=mRNA_Ecto-sp9_F_contig1094.823.1|Name=mRNA_Ecto-sp9_F_contig1094.823.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=15320bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1094:3599..18918- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1094:3599..18918- >mRNA_Ecto-sp9_F_contig1094.823.1 ID=mRNA_Ecto-sp9_F_contig1094.823.1|Name=mRNA_Ecto-sp9_F_contig1094.823.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=6258bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1094:3599..18918- (Ectocarpus species9 EcSCA_722f female)back to top |