mRNA_Ecto-sp9_F_contig1085.736.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1085.736.1
Unique NamemRNA_Ecto-sp9_F_contig1085.736.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1085.736.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1085contigEcto-sp9_F_contig1085:8284..8937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1085.736.1prot_Ecto-sp9_F_contig1085.736.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1085 8443..8772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928306.6731389-UTR-Ecto-sp9_F_contig1085:8283..84421622928306.6731389-UTR-Ecto-sp9_F_contig1085:8283..8442Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1085 8284..8442 +
1692277828.8542907-UTR-Ecto-sp9_F_contig1085:8283..84421692277828.8542907-UTR-Ecto-sp9_F_contig1085:8283..8442Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1085 8284..8442 +
1622928306.7000015-UTR-Ecto-sp9_F_contig1085:8772..89371622928306.7000015-UTR-Ecto-sp9_F_contig1085:8772..8937Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1085 8773..8937 +
1692277828.8763022-UTR-Ecto-sp9_F_contig1085:8772..89371692277828.8763022-UTR-Ecto-sp9_F_contig1085:8772..8937Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1085 8773..8937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928306.6847358-CDS-Ecto-sp9_F_contig1085:8442..87721622928306.6847358-CDS-Ecto-sp9_F_contig1085:8442..8772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1085 8443..8772 +
1692277828.8652751-CDS-Ecto-sp9_F_contig1085:8442..87721692277828.8652751-CDS-Ecto-sp9_F_contig1085:8442..8772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1085 8443..8772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1085.736.1

>prot_Ecto-sp9_F_contig1085.736.1 ID=prot_Ecto-sp9_F_contig1085.736.1|Name=mRNA_Ecto-sp9_F_contig1085.736.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=110bp
MLTSRRHNTNRNEQCMRKAVIPQVQTGVPTVPRVCPKLRRCAPGRQLLDM
HTAKIDMWETTRSPSKGIVHTTKFIEKILMVVVSKPETESRRALLRKTTN
SVQYKRAAR*
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mRNA from alignment at Ecto-sp9_F_contig1085:8284..8937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1085.736.1 ID=mRNA_Ecto-sp9_F_contig1085.736.1|Name=mRNA_Ecto-sp9_F_contig1085.736.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1085:8284..8937+ (Ectocarpus species9 EcSCA_722f female)
CTGCAACAAACGCACTCAATTTTTGGCAAGAGAAGAGTACAGCTGCCTTT
CCCTCAAGTGCACTTTCCAAAACATTGTTTTCTTACCATTGAATGAGGAG
TATACAAACCTCATCAGGATTCAAACTCGCCACCTGACGAGGAATTCGTA
CGCTCAACAATGCTGACTTCTAGGCGCCACAACACAAACCGCAACGAGCA
ATGCATGCGTAAAGCTGTCATACCTCAGGTACAGACGGGTGTACCAACCG
TGCCTCGCGTATGCCCAAAACTGCGAAGATGTGCACCCGGAAGACAACTT
CTTGACATGCATACGGCCAAGATAGACATGTGGGAAACAACTCGATCACC
ATCAAAAGGTATTGTCCATACAACCAAATTTATCGAGAAAATTCTCATGG
TTGTGGTATCAAAACCTGAGACCGAATCTCGGAGAGCTTTACTTCGAAAA
ACGACCAACTCCGTACAGTACAAAAGAGCGGCGCGTTAGCGCTGTTTTGA
CACATCGAAACACGTGCACCCAAAAAACTTCGAACCTAATTGGCCGGCTC
AATCCATGTGCTCACATTAGCAGCTGACAAGACCAGCGCATGTTGGCCGC
GAGTGTAACAACTCCCATCCCAATAAGTACTGGAGTATCAGCTGCCAAGC
AATA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1085:8284..8937+

>mRNA_Ecto-sp9_F_contig1085.736.1 ID=mRNA_Ecto-sp9_F_contig1085.736.1|Name=mRNA_Ecto-sp9_F_contig1085.736.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1085:8284..8937+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGACTTCTAGGCGCCACAACACAAACCGCAACGAGCAATGCATGCG
TAAAGCTGTCATACCTCAGGTACAGACGGGTGTACCAACCGTGCCTCGCG
TATGCCCAAAACTGCGAAGATGTGCACCCGGAAGACAACTTCTTGACATG
CATACGGCCAAGATAGACATGTGGGAAACAACTCGATCACCATCAAAAGG
TATTGTCCATACAACCAAATTTATCGAGAAAATTCTCATGGTTGTGGTAT
CAAAACCTGAGACCGAATCTCGGAGAGCTTTACTTCGAAAAACGACCAAC
TCCGTACAGTACAAAAGAGCGGCGCGTTAGATGCTGACTTCTAGGCGCCA
CAACACAAACCGCAACGAGCAATGCATGCGTAAAGCTGTCATACCTCAGG
TACAGACGGGTGTACCAACCGTGCCTCGCGTATGCCCAAAACTGCGAAGA
TGTGCACCCGGAAGACAACTTCTTGACATGCATACGGCCAAGATAGACAT
GTGGGAAACAACTCGATCACCATCAAAAGGTATTGTCCATACAACCAAAT
TTATCGAGAAAATTCTCATGGTTGTGGTATCAAAACCTGAGACCGAATCT
CGGAGAGCTTTACTTCGAAAAACGACCAACTCCGTACAGTACAAAAGAGC
GGCGCGTTAG
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