mRNA_Ecto-sp9_F_contig10811.714.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A6_ECTSI) HSP 1 Score: 146 bits (368), Expect = 8.150e-39 Identity = 77/92 (83.70%), Postives = 78/92 (84.78%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVSRGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP AVEIA LP WEE+ ATRGK EGQVQVFQRAGKAIAAQWSAASSTWIEVGEV ASEA QVDGE FDRVYPIEVEGV GAVR LQIG
Sbjct: 347 GPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEV---MGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIG 435
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: WD40-repeat-containing (domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND0_9STRA) HSP 1 Score: 103 bits (258), Expect = 6.340e-24 Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVSRGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP +EI+ LP+WE+R A G+ E QVQVFQR GKAIAAQWSAASS W+E+GEV+ ++ + +DG +D V+PIE+EG +G VR L+IG
Sbjct: 343 GPSDMEISKLPHWEQRHALPGRAEQQVQVFQRDGKAIAAQWSAASSAWVEIGEVT---GSTNSGTLDGVQYDHVFPIEIEG-QGGVRTLKIG 430
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BXD0_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.350e-23 Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVSRGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP + EIA LP W+ R+ G+ +GQVQVFQR GKAIAAQWSA SSTWIEVGEV+ S A +DG FD V+PIE++ G V L+IG
Sbjct: 61 GPSSEEIAKLPRWDMRAVQTGRSDGQVQVFQRDGKAIAAQWSATSSTWIEVGEVTG--SNENAGAIDGVSFDHVFPIEIDLRGGGVTTLKIG 150
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVJ1_TRICV) HSP 1 Score: 100 bits (248), Expect = 8.290e-23 Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVSRGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP A EIA LP WE S +G+ EGQVQVF + G+AIAAQWSA + TWIEVGEV+ + A +DG +D V+PIE++ G V+ LQIG
Sbjct: 75 GPSAEEIARLPKWEMNSLQQGRSEGQVQVFNKGGRAIAAQWSATAGTWIEVGEVTG--TNQNAGTIDGVQYDHVFPIEIDVAGGGVQKLQIG 164
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULF7_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.430e-22 Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVS-RGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP EIA LP WE + +G+ EG VQVF + GKAIAAQWSAASSTWIEVGEV+ G ++ A ++G +D V PIE++ G + NLQIG
Sbjct: 399 GPSQEEIAKLPKWELNALQQGRSEGMVQVFNKGGKAIAAQWSAASSTWIEVGEVTGMGGTSENAGSINGVQYDHVLPIEIDLPSGGLSNLQIG 491
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZP4_THAPS) HSP 1 Score: 99.4 bits (246), Expect = 2.660e-22 Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVSRGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP A EI+ LP WE + T+G+ EGQVQVFQ+ GKAIAAQWS++S TWIEVGEV+ G +A+ A ++G+ +D V PIE++ G V+ LQIG
Sbjct: 400 GPSAEEISKLPKWEMNALTQGRSEGQVQVFQKDGKAIAAQWSSSSRTWIEVGEVT-GTNAN-AGTLNGKSYDHVLPIEIDVPGGGVQKLQIG 489
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: Hypothetical (protein n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ITK2_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 3.630e-22 Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVSRGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP EI+ LP WE + G+ EGQVQVF R GKAIAAQWSAAS TWIEVGEV+ + A ++DG +D V+PIE++ G V+ L+IG
Sbjct: 403 GPSPDEISKLPKWEMNALQHGRSEGQVQVFNRGGKAIAAQWSAASGTWIEVGEVTG--TNENAGEIDGVRYDHVFPIEIDVPGGGVQKLRIG 492
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: Phospholipase (A-2-activating protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAE5_FISSO) HSP 1 Score: 98.2 bits (243), Expect = 6.730e-22 Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEV--SRGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP + EIA LP WE ++ RG EGQVQVFQ+ G AIAAQWS ASSTWIEVG+V ++G +S + +DG +D V PIEV+ G V L++G
Sbjct: 350 GPSSEEIAKLPKWEHQAQHRGTSEGQVQVFQKNGIAIAAQWSMASSTWIEVGQVVGNQGSDSSGSGVIDGVHYDHVLPIEVDQTGGGVAQLRVG 443
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRT2_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.260e-21 Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVSRGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP E+A LP WE R RG EGQVQ+F +AG AIAAQWSA+S TWIEVG+V +S++ VDG +D V PIEV+ G V LQIG
Sbjct: 409 GPSPEEVAKLPAWEARLQKRGTSEGQVQLFNKAGVAIAAQWSASSQTWIEVGQV---MGSSDSGTVDGVRYDHVLPIEVDQTGGGVAKLQIG 497
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Match: Phospholipase (A-2-activating protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQT5_FISSO) HSP 1 Score: 95.9 bits (237), Expect = 4.360e-21 Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 1 GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEVGEV--SRGFSASEAAQVDGEMFDRVYPIEVEGVRGAVRNLQIG 276
GP + EIA LP W+ ++ RG EGQVQVFQ+ G AIAAQWS SSTWIEVG+V S+G ++ + +DG +D V PIEV+ G V L++G
Sbjct: 350 GPSSEEIAKLPKWKHQAQHRGTSEGQVQVFQKNGIAIAAQWSMVSSTWIEVGQVVGSQGTDSNGSGMIDGVHYDHVLPIEVDQTGGGVAQLRVG 443 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10811.714.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10811.714.1 >prot_Ecto-sp9_F_contig10811.714.1 ID=prot_Ecto-sp9_F_contig10811.714.1|Name=mRNA_Ecto-sp9_F_contig10811.714.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp GPRAVEIAVLPNWEERSATRGKLEGQVQVFQRAGKAIAAQWSAASSTWIEback to top mRNA from alignment at Ecto-sp9_F_contig10811:2796..3830- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10811.714.1 ID=mRNA_Ecto-sp9_F_contig10811.714.1|Name=mRNA_Ecto-sp9_F_contig10811.714.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1035bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10811:2796..3830- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10811:2796..3830- >mRNA_Ecto-sp9_F_contig10811.714.1 ID=mRNA_Ecto-sp9_F_contig10811.714.1|Name=mRNA_Ecto-sp9_F_contig10811.714.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10811:2796..3830- (Ectocarpus species9 EcSCA_722f female)back to top |