mRNA_Ecto-sp9_F_contig1079.688.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1079.688.1
Unique NamemRNA_Ecto-sp9_F_contig1079.688.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R3_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 7.480e-102
Identity = 180/232 (77.59%), Postives = 182/232 (78.45%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFFFSEI 696
            LSVGDGANDVPMLQ                                               VTVYMFYKNALLVLPQFFFAF SLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQD+TSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSV V VFALSLGSFIIAFFFFSE+
Sbjct:  954 LSVGDGANDVPMLQ-----------------------------------------------VTVYMFYKNALLVLPQFFFAFLSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDITSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVIVLVFALSLGSFIIAFFFFSEM 1138          
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGS7_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.110e-82
Identity = 142/297 (47.81%), Postives = 200/297 (67.34%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFF---FSEISFFTADLPQ--ISGTMRVMGGSAWFWLTLIITTSASLLLSYFGIAWAALFGTTRDVVGQEIS 876
            LS+GDGANDVPM+Q+AH+G+GI GLEG QAVN SDY++GQFRFLK LLLVHGRW+ RR   +T+Y+FYKNA+LVLPQF+F F+SL SGQNFYYD +YQ +N FFT LPI  +   DQD ++ VALA+P LY+DGI+R F+T +IFW WM EG +H  IV  +P+ A+G+  +   G+ +GLW YGL+V F  V+VA  R+ +E   WT +    + +S+G +   ++    F E  F    L    I GT   +  +  +WL  +++    +L ++   A  A++  +R  +G+EI+
Sbjct:  863 LSIGDGANDVPMIQTAHIGIGIFGLEGQQAVNASDYAIGQFRFLKSLLLVHGRWNLRRCALLTLYLFYKNAVLVLPQFYFGFYSLMSGQNFYYDFMYQVFNTFFTGLPIFVVSSFDQDASATVALAYPQLYKDGIERRFITHRIFWTWMIEGMLHGAIVMFVPLAAVGSFNIFENGQVMGLWEYGLLVMFLDVMVAQLRLGIETAYWTGMETVAYVVSVGIWWYVWYMGSKFVEFPFIPLFLGSYTIQGTYSELADNPAWWLITLVSLVLCMLPTFTFQAVKAIYAPSRSTIGREIT 1159          
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: Phospholipid-transporting (ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DI51_9STRA)

HSP 1 Score: 260 bits (664), Expect = 1.090e-75
Identity = 142/302 (47.02%), Postives = 198/302 (65.56%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFFFSEISFFTADLPQISGTMRVMGGSAWFWLTLIITTSASLLLSYFGIAWAALFGTTRDVVGQE----ISSAQRRR 894
            LS+GDGANDVPMLQ+AHVGVGI GLEG QAVNNSDYS+GQFRFL+ LL VHGR++YRRI  +  Y+FYK+A+LVLPQFF+   SL SGQ  Y D++YQ  NV FT+ PI+ALGVLD+DV  + AL+ P LY+DGI+R FL   +F  WM E  +HA ++  LP+ + G   VLP G+ V +W  G +VF   + V + R+A+E   W  V  S+  LS+  + +++     ++F+ A  P I G++ V   S+ FW T ++ T+A   +++   + + +F  TR  V +E    + S  R R
Sbjct:  776 LSIGDGANDVPMLQAAHVGVGIFGLEGQQAVNNSDYSIGQFRFLRNLLFVHGRFNYRRIATIVKYIFYKSAVLVLPQFFYGTVSLFSGQPIYEDIIYQLANVLFTATPIVALGVLDRDVPVDSALSTPALYRDGIERRFLNRSVFLAWMMEAIVHAILILFLPLLSFGYFDVLPSGKAVSIWELGTIVFLSFLTVVSLRLAVEVLEWQIVITSLILLSVALWWMSWV---VLNFWLAVAPDIYGSISVFPESSRFWFTYLLATTACFAITFVVESGSVVFAPTRSQVLRERLHALDSVDRER 1074          
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D387_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.100e-67
Identity = 129/296 (43.58%), Postives = 181/296 (61.15%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFFFSEISFFTADL--PQIS-GTMRVMGGSAWFWLTLIITTSASLLLSYFGIAWAALFGTTRDVVGQEISS 879
            LS+GDGANDVPM+Q+AH+GVGI GLEG QAVN++D+++GQFRFLK L+LVHGRW+ RR   +T Y+FYKNALLVLPQFF    SL SG   +YDL         T+LPI+ +   DQDV +++ + +P LY+DG++R F+T   FWRWM EG +H  +       A+G   V   G+ +GL+G G+V+ + V LVAN R+ +E   WT    +   +S+  F + +   S  + F   +  P I  GTM  M   +WFW T  +T +   +  Y        F  +R  +G+EI+S
Sbjct:  257 LSIGDGANDVPMIQTAHIGVGIFGLEGQQAVNSADFAIGQFRFLKPLMLVHGRWNLRRCSLLTCYLFYKNALLVLPQFFLGVRSLFSGMFTWYDLXXXXXXXXXTALPILFVATFDQDVNADIVMKYPSLYKDGLERKFMTHGSFWRWMFEGIMHGVVCYFFVEIAMGEDVVQSNGKAIGLFGAGIVMLWLVDLVANLRLGLEILYWTGYEAAFITVSILVFYVTWSVASSDNDFMVSVGYPNIVYGTMGWMMNGSWFWFTTFLTLTFCRMPMYTIYVVKRSFLPSRADIGREIAS 552          
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: PhoLip_ATPase_C (domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C810_SAPPC)

HSP 1 Score: 214 bits (545), Expect = 3.080e-64
Identity = 122/287 (42.51%), Postives = 176/287 (61.32%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFFFSEISFFTADLPQISGTMRVMGGSAWFW--LTLIITTSASLLLSYFGIAWAALFGTTRD 855
            L++GDGANDVPM+Q AH+G+GI G EG QA N SDY++ QF+ LK+LLLVHGRW  RR+  +T+YMFYKN LLVLPQFFF  + L SGQ+ YYD LYQ +NV++T+LPI+   V DQDV++  +LA P LY     + F++ ++FW W+ + +  + +V  + +GA   G +   G   GLW +G V+   VVL+AN R+A+E K W       F  +LGSF+++FF +   ++  + +           G  W    LT  +    + +L  FG+     + TT D
Sbjct:   29 LAIGDGANDVPMIQRAHIGIGISGAEGQQAANASDYAIPQFQCLKRLLLVHGRWINRRMAILTLYMFYKNVLLVLPQFFFGIYCLFSGQSTYYDPLYQLFNVWYTALPILLFSVYDQDVSAGTSLAFPTLYSS---QSFVSIRLFWIWIGDASFSSLVVLFVHVGASMYGPMAASGGDEGLWDFGFVMNGIVVLIANVRLALEVKCW-------FWGTLGSFVVSFFLYVSSAYVFSSIVAFGANFY---GVVWLVPNLTNGLLALLACVLCLFGVFAMKAYVTTFD 302          
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: Phospholipid-transporting (ATPase n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FF65_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.450e-58
Identity = 118/246 (47.97%), Postives = 159/246 (64.63%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFFFSEISFFTADLPQISGTM 738
            L+VGDGANDVPM+Q AHVGVGI G EG QA N SDYS+ +F+ LK+LLLVHGRW  RR+  +T+YMFYKN LLVLPQFFF ++   SGQ+ YYD LYQ YNV FT+LP+    V DQ V++ ++L +P LY     + F + + FW W+ +  I + ++  +P+  LG G     G   GLW  GLV+   VV+VAN R+A+E+K W       FA SLG +  + + FS +  F  +L  + G +
Sbjct:  846 LAVGDGANDVPMIQRAHVGVGIMGAEGQQAANASDYSIPEFQSLKRLLLVHGRWMNRRMSILTLYMFYKNVLLVLPQFFFGYYCSFSGQSTYYDSLYQLYNVCFTALPVFLFSVSDQHVSAPMSLQYPSLYAS---QSFGSIRWFWLWILDACISSLVILFIPLAVLGHGPSSIHGFDQGLWDVGLVMNGAVVVVANLRLALESKCWFWFIPVGFASSLGLWSASAYAFSSLLSFGGELYAVLGVV 1088          
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: Phospholipid-transporting (ATPase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8N7_9STRA)

HSP 1 Score: 209 bits (533), Expect = 9.960e-58
Identity = 112/238 (47.06%), Postives = 158/238 (66.39%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFFFSEISFFTAD 714
            L+VGDGANDVPM+Q AHVG+GI G EG QA N SDY++ QFR L++LLLVHGRW  RR+  +T+YMFYKN LLVLPQFFF  + L SGQ+ YYD LYQ +NV++T+LPI+   V DQDV++ ++ + P LY     + F++ ++FW WM + +  + +V  + +GA   G +   G   GLW  G ++   VVL+AN R+A+E K W    V+ F  S+  +  + + FS +  F A+
Sbjct:  840 LAVGDGANDVPMIQRAHVGIGISGAEGQQAANASDYAIPQFRCLRRLLLVHGRWMNRRMAILTLYMFYKNVLLVLPQFFFGCYCLFSGQSTYYDPLYQLFNVWYTALPILLFSVTDQDVSANMSQSFPTLYSS---QEFVSIRLFWIWMGDASFSSLVVLFVHIGAFTYGPMARSGLDEGLWDLGFIMNGIVVLIANLRLALEIKCWYWFTVAGFVFSIFLWFASSYVFSSVVAFGAN 1074          
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QDY3_SAPDV)

HSP 1 Score: 209 bits (532), Expect = 1.550e-57
Identity = 122/285 (42.81%), Postives = 171/285 (60.00%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFFFSEISFFTADLPQISGTMRVMGGSAWFW--LTLIITTSASLLLSYFGIAWAALFGTT 849
            L++GDGANDVPM+Q AHVG+GI G EG QA N SDY++ QF+ LK+LLLVHGRW  RR+  +T+YMFYKN LLVLPQFFF  + L SGQ+ YYD LYQ +NV++T+LPI+   V DQDV++  +LA P LY     + F++ ++FW W+ + +  + +V  + +GA   G +       GLW  G V+   VVL+AN R+A+E K W       F  +LG F+ +FF +   ++  + L           G  W    LT  +    +  L  FG+  A  + TT
Sbjct:  840 LAIGDGANDVPMIQRAHVGIGISGAEGQQAANASDYAIPQFQCLKRLLLVHGRWINRRMAILTLYMFYKNVLLVLPQFFFGIYCLFSGQSTYYDPLYQLFNVWYTALPILLFSVYDQDVSAGTSLAFPTLYSS---QSFVSIRLFWIWIGDASFSSLVVLFVHVGAFMYGPMAASSGDEGLWDLGFVMNGIVVLIANLRLALEVKCW-------FWGTLGGFVFSFFLYVSSAYVFSSLVSFGANFY---GVVWLVPNLTNGLLAVLACALCLFGVFAAKAYVTT 1111          
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: Phospholipid-translocating (P-type ATPase, flippase subfamily protein n=1 Tax=Toxoplasma gondii TgCatPRC2 TaxID=1130821 RepID=A0A151HG18_TOXGO)

HSP 1 Score: 201 bits (511), Expect = 3.080e-57
Identity = 108/232 (46.55%), Postives = 148/232 (63.79%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGV-LPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFFFSE 693
            L++GDGAND  M+QSA +G+G+ G EG QA N SDY L QFRFL  LLL HG W+YRRI K+ +YMFYKN +LVLP FFF + SL SGQ FY++ LYQ YNV FT++PI   GV DQDV  ++AL +P LY+ G   ++L  ++F +WM  G   A ++  +P    G   V    GR + LW  G V+F   ++V N +V +E    T++  + F +SL + ++  F FS 
Sbjct:  133 LAIGDGANDCNMIQSADIGIGLKGEEGMQAFNCSDYGLVQFRFLLPLLLTHGSWNYRRISKLVLYMFYKNLVLVLPMFFFGYISLFSGQKFYFEFLYQMYNVVFTAIPITLYGVFDQDVDKKLALKYPQLYRCGQIDLYLNLRVFLKWMLNGVWQAIVIFVVPTFVFGCNAVPTTTGRTMDLWMVGTVMFMMNMIVVNIKVLLETYYLTTIIWAGFYISLLACLLFVFLFSS 364          
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2P2_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.980e-57
Identity = 111/238 (46.64%), Postives = 159/238 (66.81%), Query Frame = 1
Query:    1 LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLVHGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSYNVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMSEGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRVAMENKLWTSVFVSVFALSLGSFIIAFFFFSEISFFTAD 714
            L++GDGANDVPM+Q AHVG+GI G EG QA N SDY++ QF+ L++LLLVHGRW  RR+  +T+YMFYKN LLVLPQFFF  + L SGQ+ YYD LYQ +NV++T+LPI+   V DQDV++  ++A P LY     + F+  ++FW W+++ +  + +V  + +GA   G +   G   GLW  G ++   VVL+AN R+A+E K W  + V  F  SL  ++ + + FS +  F A+
Sbjct:  845 LAIGDGANDVPMIQRAHVGIGISGAEGQQAANASDYAIPQFQCLQRLLLVHGRWINRRMAILTLYMFYKNVLLVLPQFFFGCYCLFSGQSTYYDPLYQLFNVWYTALPILLFSVYDQDVSAASSVAFPTLYSS---QSFVNIRLFWVWIADASFSSLVVLFVHVGAFMYGPLSTNGLDEGLWDLGFIMNGIVVLIANLRLALEVKCWFPLTVGGFLFSLLLWLFSSYVFSSVVSFGAN 1079          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1079.688.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized7.480e-10277.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Phospholipid-transporting1.110e-8247.81ATPase n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
Phospholipid-transporting1.090e-7547.02ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
Phospholipid-transporting1.100e-6743.58ATPase n=1 Tax=Florenciella parvula TaxID=236787 R... [more]
PhoLip_ATPase_C3.080e-6442.51domain-containing protein n=1 Tax=Saprolegnia para... [more]
Phospholipid-transporting2.450e-5847.97ATPase n=9 Tax=Aphanomyces astaci TaxID=112090 Rep... [more]
Phospholipid-transporting9.960e-5847.06ATPase (Fragment) n=1 Tax=Thraustotheca clavata Ta... [more]
Phospholipid-transporting1.550e-5742.81ATPase n=1 Tax=Saprolegnia diclina (strain VS20) T... [more]
Phospholipid-translocating3.080e-5746.55P-type ATPase, flippase subfamily protein n=1 Tax=... [more]
Phospholipid-transporting3.980e-5746.64ATPase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1079contigEcto-sp9_F_contig1079:17891..20890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue1.8e-50
Seed eggNOG ortholog112098.XP_008613622.1
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-type ATPase
Ec32 orthologEc-10_004170.1
Exons6
Model size897
Cds size897
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1079.688.1prot_Ecto-sp9_F_contig1079.688.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1079 17891..20890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928299.024994-CDS-Ecto-sp9_F_contig1079:17890..180921622928299.024994-CDS-Ecto-sp9_F_contig1079:17890..18092Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 17891..18092 -
1692277826.6298158-CDS-Ecto-sp9_F_contig1079:17890..180921692277826.6298158-CDS-Ecto-sp9_F_contig1079:17890..18092Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 17891..18092 -
1622928299.0444617-CDS-Ecto-sp9_F_contig1079:18825..190801622928299.0444617-CDS-Ecto-sp9_F_contig1079:18825..19080Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 18826..19080 -
1692277826.6401656-CDS-Ecto-sp9_F_contig1079:18825..190801692277826.6401656-CDS-Ecto-sp9_F_contig1079:18825..19080Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 18826..19080 -
1622928299.0655954-CDS-Ecto-sp9_F_contig1079:19345..194341622928299.0655954-CDS-Ecto-sp9_F_contig1079:19345..19434Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 19346..19434 -
1692277826.6508257-CDS-Ecto-sp9_F_contig1079:19345..194341692277826.6508257-CDS-Ecto-sp9_F_contig1079:19345..19434Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 19346..19434 -
1622928299.0822902-CDS-Ecto-sp9_F_contig1079:19722..198901622928299.0822902-CDS-Ecto-sp9_F_contig1079:19722..19890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 19723..19890 -
1692277826.671265-CDS-Ecto-sp9_F_contig1079:19722..198901692277826.671265-CDS-Ecto-sp9_F_contig1079:19722..19890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 19723..19890 -
1622928299.0995536-CDS-Ecto-sp9_F_contig1079:20404..205451622928299.0995536-CDS-Ecto-sp9_F_contig1079:20404..20545Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 20405..20545 -
1692277826.683005-CDS-Ecto-sp9_F_contig1079:20404..205451692277826.683005-CDS-Ecto-sp9_F_contig1079:20404..20545Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 20405..20545 -
1622928299.1143022-CDS-Ecto-sp9_F_contig1079:20848..208901622928299.1143022-CDS-Ecto-sp9_F_contig1079:20848..20890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 20849..20890 -
1692277826.692401-CDS-Ecto-sp9_F_contig1079:20848..208901692277826.692401-CDS-Ecto-sp9_F_contig1079:20848..20890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 20849..20890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1079.688.1

>prot_Ecto-sp9_F_contig1079.688.1 ID=prot_Ecto-sp9_F_contig1079.688.1|Name=mRNA_Ecto-sp9_F_contig1079.688.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=299bp
LSVGDGANDVPMLQSAHVGVGIHGLEGAQAVNNSDYSLGQFRFLKKLLLV
HGRWSYRRICKVTVYMFYKNALLVLPQFFFAFFSLSSGQNFYYDLLYQSY
NVFFTSLPIIALGVLDQDVTSEVALAHPILYQDGIQRVFLTPQIFWRWMS
EGAIHAGIVTALPMGALGAGGVLPEGRGVGLWGYGLVVFFCVVLVANGRV
AMENKLWTSVFVSVFALSLGSFIIAFFFFSEISFFTADLPQISGTMRVMG
GSAWFWLTLIITTSASLLLSYFGIAWAALFGTTRDVVGQEISSAQRRR*
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mRNA from alignment at Ecto-sp9_F_contig1079:17891..20890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1079.688.1 ID=mRNA_Ecto-sp9_F_contig1079.688.1|Name=mRNA_Ecto-sp9_F_contig1079.688.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3000bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1079:17891..20890- (Ectocarpus species9 EcSCA_722f female)
CTTAGCGTGGGAGACGGGGCCAACGACGTCCCTATGCTGCAGGTACAACC CAAATATCGCGCTTCGTTCGTCCCTCCCCAAAGCACGAGTGCACTGTAAG TCGTAGAAGCGCCGTTGAGGGAGGTCCCTGCTCGGCAGGAGTGTGGATGC ACCACTCCCGTGCCAGCGGGCCGAGTGGGGAGGACGGACGTGTCGCGTGC TGCGACGCGGTCAGCTACTCTGTTGGTGATGTGGACGATCCTATGTTCGG GACCTACTGTCAAACAAAGTAAAACATCCTCCTTTGAAATCCATCGCGCG TGTGTTCTCTCTTCTCTTTGTGACCTGTCTTGTCCCATCGCGTAGTCGGC GCACGTTGGCGTTGGCATCCACGGGCTAGAGGGAGCGCAAGCGGTGAACA ACTCGGACTACAGCCTAGGTCAGTTCCGGTTCTTGAAGAAGCTGCTCCTG GTGCACGGCCGCTGGAGTTATCGCAGAATCTGCAAGGTGCGGTGTTTGTG ATGAAATGTCATTGAGCAGTCAAGCCGCGTGTGATTCTACTCGCACGCCG CCCTTTACCCAGGGACGTTGTTCGTGCTTTGTATGGTTTCGCAGCAAGAC TAAACCCGTTCTTGCGGCAGCCAAGTGCTTCCTCGTTCACCGTATCTTTT GCAGCCTTTTTGACGATGGGGCACACTTGGTTTGTGAACCATCCCCTCGC GGGAGATGGTTCGCCGGCACTTGGGGCATCCCGACCTCTTCTATCACGTT GTTGCAGTGGAAAATACGAATCAATTGTTTATCCAGCTTATTCTCAACGA GGTTGAAGTCACCATTCGACAATTTCTTTCGTGTGGAACATGCTCCACAA CAACGACAGGCTTGTAGCCGTCCTTGGTCCCACAGCACATCACCCTCGGG TCGCGCTTGAGGTGCGAGAGTCTGCTGTCTTTGTGACTCCTATCCTCAAG GGTTAGGTTTTGTGCCCGCTTCGTCCCTTCCGCGAATGAACATGCTGTAG GTGACGGTTTACATGTTCTACAAGAACGCTCTGCTGGTCCTGCCGCAGTT CTTCTTCGCCTTCTTCTCGCTATCCTCCGGTCAGAACTTCTACTACGACC TGCTCTACCAGAGCTACAACGTGTTTTTCACCAGCCTTCCCATCATCGCC CTCGGGGTTCTCGACCAAGTAAGCACCAATGTAGAGACTCATGGCGCAAA TAGCGTCCATAGCTCAGAGAACTGCTTGTTCGCAAACACGGTCCTTGGCA AGTGTTAGTGTGTCATCCGGTCGGATACCTCCAGAAATTCACGAACACAA GATGACACCTCAGCTTTCGCCTTACACACTCGCATGAACTTCGGGCGCTC TGGGTCCATGCAGGTTTGATAGTTGTCCCGACAACCGATATCGTTCATTG GGCGGAAATACGCATAATAAGCAATACGAGCCCTCTGCCTCATTTTCACC GACCAGGACGTAACGTCGGAGGTGGCATTGGCGCACCCTATTCTCTACCA GGACGGAATTCAACGAGTGTTTCTCACGCCTCAAATATTCTGGAGGTGCG ATAGCGTCCCAATTTTGGTGGGGATGGGGTTTCGCGGCAATGAGGGCAAT AGCAGGTGGTGCTCCTTCGTGTGAATTAAGAACAAGACCCTACCTTAGAA TACCCGATGTCGTTTTTGTTGTCGTAGTCTAGTGCTTGACGGGGCCTTTG CTCGCTGCCTGTAAACTGAAATTTGACGTGCAGTCTACAGGGCTTGCGGT AAGCGACGACCAATATATGGTGTGATATTCTCAAGCCCCGTCAATGAACG TTGGAAGCAGGTGGATGAGTGAAGGAGCAATTCACGCAGGTATCGTGACA GCTCTACCCATGGGTGCGCTCGGCGCCGGAGGCGTCCTGCCGGAGGGGAG AGGGGTCGGACTCTGGGGCTACGGTTTGGTAGTATTTTTCTGCGTCGTCC TCGTGGCAAACGGGCGTGTAGCAATGGAGAACAAGCTCTGGACATCGGTG TTTGTGTCGGTGTTCGCACTGTCTCTAGGATCCTTCATCATCGCCTTTTT CTTCTTCTCGGAAATGTGAGCCAACATTAATGAAACGTTCTTGATATAGC TTGACCACGTACACAGTTATTACGTGTTTGGGCGGTCAACTTACGTTGGG GCCCAGGTTTTGTTCTACACTGCCCTATTCCGGCATGAACGCTAGTAACC AACCCCGCCGTTACGAAGCAATAATCCTGAGGGCGTGTGCTGCGCGGGAA CGGACGGTCTCAAGCAGCCTGCCAGAATACACGTATAGCACGCTGCAGAA TTTAGTCACAGCCTGGTTCATCTTCCATACGCTAGCGCAAACCCATACCG GCTCAATCAAAAACGCCAGGTCGAAAGGAGATGTCACAACATTGGTAGGG TAGGGGTACATTCGTTAGACAAACAGCATTTCGGCTCCCACGGAGCCACG CCACAGACTTGTTCAGAGCTGGTTCGACACGGTCAACATTCCAATCAATC CGATCAACGCACCGAAATGCGAGTACCATTGCCCATAGACACGCAGACGT CGGTGCCGAGCGCAACTCGTCCTGGAAAATCAGTGGCAAAGAAACAAGGA CAGCGCCGGTGTCACTGCAGGGTTCAACAGTCACCTCACAGCGTTTTCAG GTGGTACTCTGAACGCATGATCGCCCTTCTCCACTGCGGTACAATTTTTC TTTCTGTCGGGATATTGCATCATCTCTACCCCAGACTGACCCGGACCAAA TCGGCTCTAGATCCAAGGAAATCCGACCCGGTCGTACTTGTTCCACAGAT CATTCTTCACCGCGGACCTGCCGCAAATATCGGGGACGATGCGCGTGATG GGCGGCAGCGCCTGGTTCTGGTTAACCCTGATCATTACGACATCTGCCTC CCTGCTGCTATCCTACTTCGGGATAGCATGGGCGGCGCTTTTTGGGACGA CAAGGGATGTCGTCGGACAGGAGATATCTTCAGCGCAGAGGCGCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1079:17891..20890-

>mRNA_Ecto-sp9_F_contig1079.688.1 ID=mRNA_Ecto-sp9_F_contig1079.688.1|Name=mRNA_Ecto-sp9_F_contig1079.688.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1794bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1079:17891..20890- (Ectocarpus species9 EcSCA_722f female)
CTTAGCGTGGGAGACGGGGCCAACGACGTCCCTATGCTGCAGCTTAGCGT
GGGAGACGGGGCCAACGACGTCCCTATGCTGCAGTCGGCGCACGTTGGCG
TTGGCATCCACGGGCTAGAGGGAGCGCAAGCGGTGAACAACTCGGACTAC
AGCCTAGGTCAGTTCCGGTTCTTGAAGAAGCTGCTCCTGGTGCACGGCCG
CTGGAGTTATCGCAGAATCTGCAAGTCGGCGCACGTTGGCGTTGGCATCC
ACGGGCTAGAGGGAGCGCAAGCGGTGAACAACTCGGACTACAGCCTAGGT
CAGTTCCGGTTCTTGAAGAAGCTGCTCCTGGTGCACGGCCGCTGGAGTTA
TCGCAGAATCTGCAAGGTGACGGTTTACATGTTCTACAAGAACGCTCTGC
TGGTCCTGCCGCAGTTCTTCTTCGCCTTCTTCTCGCTATCCTCCGGTCAG
AACTTCTACTACGACCTGCTCTACCAGAGCTACAACGTGTTTTTCACCAG
CCTTCCCATCATCGCCCTCGGGGTTCTCGACCAAGTGACGGTTTACATGT
TCTACAAGAACGCTCTGCTGGTCCTGCCGCAGTTCTTCTTCGCCTTCTTC
TCGCTATCCTCCGGTCAGAACTTCTACTACGACCTGCTCTACCAGAGCTA
CAACGTGTTTTTCACCAGCCTTCCCATCATCGCCCTCGGGGTTCTCGACC
AAGACGTAACGTCGGAGGTGGCATTGGCGCACCCTATTCTCTACCAGGAC
GGAATTCAACGAGTGTTTCTCACGCCTCAAATATTCTGGAGGACGTAACG
TCGGAGGTGGCATTGGCGCACCCTATTCTCTACCAGGACGGAATTCAACG
AGTGTTTCTCACGCCTCAAATATTCTGGAGGTGGATGAGTGAAGGAGCAA
TTCACGCAGGTATCGTGACAGCTCTACCCATGGGTGCGCTCGGCGCCGGA
GGCGTCCTGCCGGAGGGGAGAGGGGTCGGACTCTGGGGCTACGGTTTGGT
AGTATTTTTCTGCGTCGTCCTCGTGGCAAACGGGCGTGTAGCAATGGAGA
ACAAGCTCTGGACATCGGTGTTTGTGTCGGTGTTCGCACTGTCTCTAGGA
TCCTTCATCATCGCCTTTTTCTTCTTCTCGGAAATGTGGATGAGTGAAGG
AGCAATTCACGCAGGTATCGTGACAGCTCTACCCATGGGTGCGCTCGGCG
CCGGAGGCGTCCTGCCGGAGGGGAGAGGGGTCGGACTCTGGGGCTACGGT
TTGGTAGTATTTTTCTGCGTCGTCCTCGTGGCAAACGGGCGTGTAGCAAT
GGAGAACAAGCTCTGGACATCGGTGTTTGTGTCGGTGTTCGCACTGTCTC
TAGGATCCTTCATCATCGCCTTTTTCTTCTTCTCGGAAATATCATTCTTC
ACCGCGGACCTGCCGCAAATATCGGGGACGATGCGCGTGATGGGCGGCAG
CGCCTGGTTCTGGTTAACCCTGATCATTACGACATCTGCCTCCCTGCTGC
TATCCTACTTCGGGATAGCATGGGCGGCGCTTTTTGGGACGACAAGGGAT
GTCGTCGGACAGGAGATATCTTCAGCGCAGAGGCGCAGGTGAATCATTCT
TCACCGCGGACCTGCCGCAAATATCGGGGACGATGCGCGTGATGGGCGGC
AGCGCCTGGTTCTGGTTAACCCTGATCATTACGACATCTGCCTCCCTGCT
GCTATCCTACTTCGGGATAGCATGGGCGGCGCTTTTTGGGACGACAAGGG
ATGTCGTCGGACAGGAGATATCTTCAGCGCAGAGGCGCAGGTGA
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