mRNA_Ecto-sp9_F_contig10771.675.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10771.675.1
Unique NamemRNA_Ecto-sp9_F_contig10771.675.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10771.675.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y7_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.770e-34
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 VGELLHSDMITEDRAKIAFFPYLQGGDDEAEGNDIMHNGLDAGAVGFLSDSDNEEGERKCDDDDAGTDGLG 213
            VGELLHSD+ITED AKIAF PYLQGGD EAEGNDIMHNGLDAGAVGFLSDSD+EEGERKCDDDDAG  GLG
Sbjct:   66 VGELLHSDVITEDSAKIAFSPYLQGGDHEAEGNDIMHNGLDAGAVGFLSDSDSEEGERKCDDDDAGPGGLG 136
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10771.675.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U4_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.720e-28
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 VGELLHSDMITEDRAKIAFFPYLQGGDDEAEGNDIMHNGLDAGAVGFLSDSDNEEGERKCDDDDAGTDGLG 213
            VGELLHSD+I+ED AKIAF PYLQGGDDEAE NDIMH GLDAGAVGFLSDSDNEEG      DDAG DGLG
Sbjct:   18 VGELLHSDVISEDSAKIAFSPYLQGGDDEAESNDIMHKGLDAGAVGFLSDSDNEEG------DDAGPDGLG 82
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10771.675.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.750e-25
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 VGELLHSDMITEDRAKIAFFPYLQGGDDEAEGNDIMHNGLDAGAVGFLSDSDNEEGERKCDDDDAGTDGLG 213
            VGELLHSD+I+ED AKIAF P+LQGGDDEAEGN IMH GLDAGAVGFLSDSDNEEG      DDAG DGLG
Sbjct:  112 VGELLHSDVISEDSAKIAFSPHLQGGDDEAEGN-IMHKGLDAGAVGFLSDSDNEEG------DDAGPDGLG 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10771.675.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.770e-3490.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.720e-2881.69protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.750e-2580.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10771contigEcto-sp9_F_contig10771:69..969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size326
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10771.675.1prot_Ecto-sp9_F_contig10771.675.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10771 77..945 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928297.1128943-UTR-Ecto-sp9_F_contig10771:68..761622928297.1128943-UTR-Ecto-sp9_F_contig10771:68..76Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10771 69..76 -
1692277825.9978085-UTR-Ecto-sp9_F_contig10771:68..761692277825.9978085-UTR-Ecto-sp9_F_contig10771:68..76Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10771 69..76 -
1622928297.1519618-UTR-Ecto-sp9_F_contig10771:945..9691622928297.1519618-UTR-Ecto-sp9_F_contig10771:945..969Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10771 946..969 -
1692277826.0282278-UTR-Ecto-sp9_F_contig10771:945..9691692277826.0282278-UTR-Ecto-sp9_F_contig10771:945..969Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10771 946..969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928297.12572-CDS-Ecto-sp9_F_contig10771:76..3211622928297.12572-CDS-Ecto-sp9_F_contig10771:76..321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10771 77..321 -
1692277826.008072-CDS-Ecto-sp9_F_contig10771:76..3211692277826.008072-CDS-Ecto-sp9_F_contig10771:76..321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10771 77..321 -
1622928297.1383877-CDS-Ecto-sp9_F_contig10771:896..9451622928297.1383877-CDS-Ecto-sp9_F_contig10771:896..945Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10771 897..945 -
1692277826.0168383-CDS-Ecto-sp9_F_contig10771:896..9451692277826.0168383-CDS-Ecto-sp9_F_contig10771:896..945Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10771 897..945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10771.675.1

>prot_Ecto-sp9_F_contig10771.675.1 ID=prot_Ecto-sp9_F_contig10771.675.1|Name=mRNA_Ecto-sp9_F_contig10771.675.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=98bp
MITEDRAKIAFFPYLQGGDDEAEGNDIMHNGLDAGAVGFLSDSDNEEGER
KCDDDDAGTDGLGKPGRRERARRRRRRVGARKGARPRGPAGAGRRQW*
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mRNA from alignment at Ecto-sp9_F_contig10771:69..969-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10771.675.1 ID=mRNA_Ecto-sp9_F_contig10771.675.1|Name=mRNA_Ecto-sp9_F_contig10771.675.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=901bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10771:69..969- (Ectocarpus species9 EcSCA_722f female)
GTTGGAGAACTCCTGCACTCCGATATGATAACCGAGGATAGAGCCAAGAT
AGCGTTCTTCCCGTACCTCCAAGGTGACAACACAAAACCTTTTTCACGTT
CGTCGTGTCTATTCTGACATCTCCCTTCATATGACGTCACAACTTTGAAG
ATTTCCTTGGTGTCGCGCTCTGCAGTCGTAGATAGCAATCCAAGTCCTAT
ACGCCCTGCACGCAAAAAAAGGCGTTTGTATGTTATTGAAAATGTCCACA
AGAGCCGTTTTTTCCTGGACTAATTTTACGGCAATTGACAAAATGGGGTA
TACCCCGCGTGTTTGGGCACAAAATGGGGTACACTGTCTTTTTCGTGTGG
GGCGCAACGCCTGACGCCGGGTAGGCGCCTTTAAACCACCTTCTAGCGCT
TCAACCCCATGCGCCAGGACCTTCGAGACTCTCTCTAACACGAAAGGCTC
TGGTACTACCCGTCGGCACAAACCTCACCTCGCCCTCTGTAGGCTATTAA
CTAACGCTAGTACCCCTAATTCTTACGCATCCATCGTCAACCCTTCCGTG
AGCGCGCACATATAGCCCCTGCTTCCAAACACCTATTCTAATGAATGCTA
CGATTTTTCTTAAACCCCACATCATGTACGTATGTATGTGAAACACAGGG
GGCGACGACGAGGCTGAAGGCAACGACATCATGCATAATGGCCTCGACGC
TGGTGCCGTCGGGTTCCTGTCGGACAGCGACAACGAGGAGGGCGAAAGAA
AATGCGACGACGACGACGCCGGGACGGACGGGCTCGGTAAACCAGGTCGA
CGGGAACGAGCAAGAAGGCGACGGCGACGAGTCGGGGCACGCAAAGGGGC
ACGACCGCGAGGGCCAGCAGGAGCAGGTCGACGGCAATGGTGAAGAAGGG
A
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10771:69..969-

>mRNA_Ecto-sp9_F_contig10771.675.1 ID=mRNA_Ecto-sp9_F_contig10771.675.1|Name=mRNA_Ecto-sp9_F_contig10771.675.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10771:69..969- (Ectocarpus species9 EcSCA_722f female)
ATGATAACCGAGGATAGAGCCAAGATAGCGTTCTTCCCGTACCTCCAAGA
TGATAACCGAGGATAGAGCCAAGATAGCGTTCTTCCCGTACCTCCAAGGG
GGCGACGACGAGGCTGAAGGCAACGACATCATGCATAATGGCCTCGACGC
TGGTGCCGTCGGGTTCCTGTCGGACAGCGACAACGAGGAGGGCGAAAGAA
AATGCGACGACGACGACGCCGGGACGGACGGGCTCGGTAAACCAGGTCGA
CGGGAACGAGCAAGAAGGCGACGGCGACGAGTCGGGGCACGCAAAGGGGC
ACGACCGCGAGGGCCAGCAGGAGCAGGTCGACGGCAATGGTGAGGGGCGA
CGACGAGGCTGAAGGCAACGACATCATGCATAATGGCCTCGACGCTGGTG
CCGTCGGGTTCCTGTCGGACAGCGACAACGAGGAGGGCGAAAGAAAATGC
GACGACGACGACGCCGGGACGGACGGGCTCGGTAAACCAGGTCGACGGGA
ACGAGCAAGAAGGCGACGGCGACGAGTCGGGGCACGCAAAGGGGCACGAC
CGCGAGGGCCAGCAGGAGCAGGTCGACGGCAATGGTGA
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