mRNA_Ecto-sp9_F_contig10754.656.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10754.656.1
Unique NamemRNA_Ecto-sp9_F_contig10754.656.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10754.656.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 5.840e-48
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 RDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSRE 252
            RDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSRE
Sbjct:  511 RDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSRE 594
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BLAST of mRNA_Ecto-sp9_F_contig10754.656.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 6.030e-48
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 RDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSRE 252
            RDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSRE
Sbjct:  685 RDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSRE 768
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10754.656.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.840e-48100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.030e-48100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10754contigEcto-sp9_F_contig10754:3333..3839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928295.0450528-CDS-Ecto-sp9_F_contig10754:3332..35061622928295.0450528-CDS-Ecto-sp9_F_contig10754:3332..3506Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 3333..3506 -
1692277825.190076-CDS-Ecto-sp9_F_contig10754:3332..35061692277825.190076-CDS-Ecto-sp9_F_contig10754:3332..3506Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 3333..3506 -
1622928295.0568311-CDS-Ecto-sp9_F_contig10754:3761..38391622928295.0568311-CDS-Ecto-sp9_F_contig10754:3761..3839Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 3762..3839 -
1692277825.198544-CDS-Ecto-sp9_F_contig10754:3761..38391692277825.198544-CDS-Ecto-sp9_F_contig10754:3761..3839Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 3762..3839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10754.656.1prot_Ecto-sp9_F_contig10754.656.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10754 3333..3839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10754.656.1

>prot_Ecto-sp9_F_contig10754.656.1 ID=prot_Ecto-sp9_F_contig10754.656.1|Name=mRNA_Ecto-sp9_F_contig10754.656.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=84bp
RDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQ
QRVEQCPSTLPDTVLSELVDTLLTRVQCSATSRE
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mRNA from alignment at Ecto-sp9_F_contig10754:3333..3839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10754.656.1 ID=mRNA_Ecto-sp9_F_contig10754.656.1|Name=mRNA_Ecto-sp9_F_contig10754.656.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=507bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10754:3333..3839- (Ectocarpus species9 EcSCA_722f female)
AGAGACTTGTGCCGCGCGCTGCAGCAGCACAGGCTGCTGGAGAGCCCGCA
TCTGCACGTGCGCAGCCTTGCCCTCGAGGTGGGAGAGATCGGAAAGGACA
GGCAGCAAAGTCGGTGTTGTGACTCGCTAGCCACCTGCACCTTTTCGTTA
GCCTAAGATTTGCTCAAGTCAGTTTTTTCCCCACTTTGCTTGTTGAGGGA
CAGCCTACGTGCATGATTGCCGTCGCTGTTGAGCCTGTTGCAAAGTTGGT
GGTGCATTGACCCCTCCAAGCATGTTCCTTAAACTTGCCGCGTGCTCCTG
CCCCTTCTTGCGAACAATCAATCCGACGGCCAGGCTATGTTCCTGTTGGT
GCCAGACCCTTCGCCGCTGGACCCACAGCTCCGAGGCCTGTGGGACTGGC
TGCAGCAAAGAGTTGAGCAGTGCCCCTCCACCCTCCCGGACACTGTCCTT
AGCGAGCTGGTGGACACCCTGCTCACGCGGGTCCAGTGCAGCGCTACCAG
CCGGGAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10754:3333..3839-

>mRNA_Ecto-sp9_F_contig10754.656.1 ID=mRNA_Ecto-sp9_F_contig10754.656.1|Name=mRNA_Ecto-sp9_F_contig10754.656.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10754:3333..3839- (Ectocarpus species9 EcSCA_722f female)
AGAGACTTGTGCCGCGCGCTGCAGCAGCACAGGCTGCTGGAGAGCCCGCA
TCTGCACGTGCGCAGCCTTGCCCTCGAGAGAGACTTGTGCCGCGCGCTGC
AGCAGCACAGGCTGCTGGAGAGCCCGCATCTGCACGTGCGCAGCCTTGCC
CTCGAGGCTATGTTCCTGTTGGTGCCAGACCCTTCGCCGCTGGACCCACA
GCTCCGAGGCCTGTGGGACTGGCTGCAGCAAAGAGTTGAGCAGTGCCCCT
CCACCCTCCCGGACACTGTCCTTAGCGAGCTGGTGGACACCCTGCTCACG
CGGGTCCAGTGCAGCGCTACCAGCCGGGAAGCTATGTTCCTGTTGGTGCC
AGACCCTTCGCCGCTGGACCCACAGCTCCGAGGCCTGTGGGACTGGCTGC
AGCAAAGAGTTGAGCAGTGCCCCTCCACCCTCCCGGACACTGTCCTTAGC
GAGCTGGTGGACACCCTGCTCACGCGGGTCCAGTGCAGCGCTACCAGCCG
GGAA
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