mRNA_Ecto-sp9_F_contig10695.616.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10695.616.1
Unique NamemRNA_Ecto-sp9_F_contig10695.616.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10695.616.1 vs.
Match: Kinesin-like (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR6_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 6.550e-91
Identity = 176/207 (85.02%), Postives = 179/207 (86.47%), Query Frame = 1 
Query:    1 LDVLRNVNLEWEEKLKEALRTSTEEAAARLKLEHENSVLSARVKELDTARAASEDLILELSKEKSRMLGSSGEASDTIESLVDEYSRLASEHTAQRQMDSETIQRLENVRDELVEKLKAHETNIMQLLQRAEEDGAVSQQMSERDVAGKPDASPASEEVPXXXXXXXXXXXXXXXXXRAENEAVVAELRQKLEAENAEESAFALSVA 621
            LDVLRNVNLEWEEKLKEALRTSTEEAAARLKLEHENSVLSA+VKELDTARAASEDLILELS+EKSRMLGSSGEASDTIESLVDEYSRLASEHTAQRQMDSETIQRLENVRDELVEKLKAHETNIMQLLQRAEEDGAVSQQMSERDVAGKPD +PAS E P                 RAENEAVVAELR       AEESA ALSVA
Sbjct:  138 LDVLRNVNLEWEEKLKEALRTSTEEAAARLKLEHENSVLSAKVKELDTARAASEDLILELSREKSRMLGSSGEASDTIESLVDEYSRLASEHTAQRQMDSETIQRLENVRDELVEKLKAHETNIMQLLQRAEEDGAVSQQMSERDVAGKPDEAPASGEAPPSAEEIEKRLEEQAAKLRAENEAVVAELRXXXXXXXAEESASALSVA 344
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10695.616.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Kinesin-like6.550e-9185.02protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR6... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10695contigEcto-sp9_F_contig10695:476..3600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.9
Seed ortholog evalue1.8e-78
Seed eggNOG ortholog2880.D8LLR6
KEGG koko:K10406
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons6
Model size623
Cds size621
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10695.616.1prot_Ecto-sp9_F_contig10695.616.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10695 476..3600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928288.3823862-CDS-Ecto-sp9_F_contig10695:475..5301622928288.3823862-CDS-Ecto-sp9_F_contig10695:475..530Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 476..530 -
1692277822.40549-CDS-Ecto-sp9_F_contig10695:475..5301692277822.40549-CDS-Ecto-sp9_F_contig10695:475..530Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 476..530 -
1622928288.397741-CDS-Ecto-sp9_F_contig10695:1087..11521622928288.397741-CDS-Ecto-sp9_F_contig10695:1087..1152Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 1088..1152 -
1692277822.4177356-CDS-Ecto-sp9_F_contig10695:1087..11521692277822.4177356-CDS-Ecto-sp9_F_contig10695:1087..1152Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 1088..1152 -
1622928288.4122643-CDS-Ecto-sp9_F_contig10695:1954..21161622928288.4122643-CDS-Ecto-sp9_F_contig10695:1954..2116Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 1955..2116 -
1692277822.427753-CDS-Ecto-sp9_F_contig10695:1954..21161692277822.427753-CDS-Ecto-sp9_F_contig10695:1954..2116Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 1955..2116 -
1622928288.4236848-CDS-Ecto-sp9_F_contig10695:2604..26791622928288.4236848-CDS-Ecto-sp9_F_contig10695:2604..2679Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 2605..2679 -
1692277822.4420757-CDS-Ecto-sp9_F_contig10695:2604..26791692277822.4420757-CDS-Ecto-sp9_F_contig10695:2604..2679Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 2605..2679 -
1622928288.4338949-CDS-Ecto-sp9_F_contig10695:2925..30841622928288.4338949-CDS-Ecto-sp9_F_contig10695:2925..3084Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 2926..3084 -
1692277822.4548383-CDS-Ecto-sp9_F_contig10695:2925..30841692277822.4548383-CDS-Ecto-sp9_F_contig10695:2925..3084Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 2926..3084 -
1622928288.4458141-CDS-Ecto-sp9_F_contig10695:3495..36001622928288.4458141-CDS-Ecto-sp9_F_contig10695:3495..3600Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 3496..3600 -
1692277822.4672327-CDS-Ecto-sp9_F_contig10695:3495..36001692277822.4672327-CDS-Ecto-sp9_F_contig10695:3495..3600Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10695 3496..3600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10695.616.1

>prot_Ecto-sp9_F_contig10695.616.1 ID=prot_Ecto-sp9_F_contig10695.616.1|Name=mRNA_Ecto-sp9_F_contig10695.616.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=207bp
LDVLRNVNLEWEEKLKEALRTSTEEAAARLKLEHENSVLSARVKELDTAR
AASEDLILELSKEKSRMLGSSGEASDTIESLVDEYSRLASEHTAQRQMDS
ETIQRLENVRDELVEKLKAHETNIMQLLQRAEEDGAVSQQMSERDVAGKP
DASPASEEVPPSAEEIEKRLEEQAAKLRAENEAVVAELRQKLEAENAEES
AFALSVA
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mRNA from alignment at Ecto-sp9_F_contig10695:476..3600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10695.616.1 ID=mRNA_Ecto-sp9_F_contig10695.616.1|Name=mRNA_Ecto-sp9_F_contig10695.616.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3125bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10695:476..3600- (Ectocarpus species9 EcSCA_722f female)
CTTGACGTGCTAAGGAACGTGAACTTGGAGTGGGAGGAAAAGCTCAAGGA
GGCGTTGCGGACGAGCACGGAGGAGGCAGCGGCGAGGCTCAAGCTGGAGC
ACGAGGTGAGAAGAGAGCCACTCGGTGGGGAGGTTTTGGGTGATAAAGAG
GAGGCCTGCCTGCGCTGGTTGGGCTCAGCCTCGGTCCCCGGCTTGTGGTG
GCAAGATGGTTGTAGCCGGCAATATATATTTTTTTATGACTGTTTTTTTC
TATTTAGGTGCGAGAGGAGAAGATGGACGCGATTTTCTTTCAAAAGTGAA
CATGCATGCAGACCTCCTCCGCCTCGACATGCACGAAGGCCATGAGTCGC
GCCGCACTTGTGCACGTAGTGCCCCCGGTTGTTCTACCCTTTCCATCTTG
CCCTGCTTCTGCTGCTGCTACGATCACCACTACCGCCAAAGCTAATACCG
CTGTCGCTACCCCCGTTTCCCCCCCTCCCCTCATCGCCGACGCTGCCGCA
CGCGCCCACCATGTAGAACTCCGTCCTGAGCGCGAGGGTGAAAGAGCTCG
ACACGGCGCGGGCGGCGAGCGAGGACCTGATCCTGGAGCTGTCCAAGGAG
AAAAGCCGCATGCTCGGGTCCTCTGGGGAGGCTAGCGACACCATCGAGAG
CCTCGTTGACGAGTACAGCCGGCTGGTAAGGTCTTTGCCTGCGGTAAGCA
GCTTGCCGGTGTGATTTGTTTTTTTGTGCTCGTGCCCGCGACGCGTTCCG
CTACTGCAGCAGTATGGCGCTCTTCTGCTGCAGTTGGGTTGGATGCCGTT
CAGCTTTTTGTCGGTGCCCTCGAAAGACTTTGGCGTTGGTTGCGCTCATG
CTGTCGCTACATACGTCTTTGTTTGCGGTTAACCCTTGCCCGTGTCCTGC
CAATGACAACGCGCACTCCAGGCTTCCGAGCACACGGCGCAGCGGCAGAT
GGACAGCGAAACCATTCAACGCCTCGAGAACGTCCGGGACGAACTGGTAG
GTGGGGGGGGTCGTACGTCATTTGGCCACGGAGCCCCTTTGGAGGCACGA
AGGAGCAGCGTTCCTTCTCCTCCTATTGATAACCTTCGAGAACGTCGAAA
AAGAGTCGGGTGCTCGCTCTGTTTTCGGTTCTACTTTGAAGAATGCCAGC
ATGCGGCAGCTACAATAGTCTCGGTTTTATTGTATGGTAACTCTTTTGTG
CGGTTCGCCATGCTCTTTACATCGTCGTGCTTTACGGCTATTTGATTCTG
AGTCCGTCGCTGTGGGTGACGTTTGGTACATAGATCACAGGTAGGTGCAC
ATACAGGCAGTCATGCTCCGGCGCTTGCTTTGGATCATTGGTGCAAATAG
AGTGCGAGTTGACACATGTGTGCGTTCTTTGATTTTGCATCGACCGCGCT
AACCGGCTGACCAATGAAAAGACGTCAGCCTCACGGCGGATAGAAAACAC
GAACATGCGTCCGTCTATGCGCGGAACTACATAGGTGGAAAAACTCAAGG
CCCACGAGACGAACATCATGCAGCTGCTGCAGAGGGCCGAGGAGGACGGC
GCTGTTTCTCAGCAGATGTCGGAGCGCGACGTGGCGGGCAAGCCCGACGC
GTCGCCAGCCTCCGAGGAAGTCCCTCCGTCGGCCGAGGAGATCGAGGTGG
GGTTAGCAGCGAAAATCGCAATCCTCGCAAGAGAGTTGGTTGACGAGATC
CACGAGAGAGAGAGAGAGAGAGAGAGTTGGGTCTCGCTGCCGAAAACACG
CACCTCCTGGCGGTGTATCGCACGGCGTTCGGGCTGACGATCGCATTGCT
ATGGGATCCCGGCGGGGGTGGGGGGGGGTGGGGGGGTTATTTTTGTAAAC
GCATGCCGTAGTCGTCAGAGTATTGATTTCGCATCCCCCGGACGGGACGG
AGCGATATGCCGGGTTTTCGCCCGCCCAGGCTAGATCGGGGGGGGGGGTT
CTACGGCAGCAGTTTTCCTTTGGTGACGTGTGCACTGTCTCCTTGTTTTT
TATTTCCGTGAGGGTCAGCGCCGCCTTCCACATGATCTCGGGGTGTGTCT
ATTCTTGTCGAGCCTATCACAGCCACGGGGGAGATATCGCTGCTGTAGCG
CGCATTTGCCCGTAGATGAGCAGAAAAACTGTAACTCAAAGGTCCTGTGC
ATTAATGCCAGGGAGGTTAGTCACCCACGTCCAACAACACATCACTGCAT
TCCCCAAAACACACGAAACACACATTGTACATGCGTGACGGCAACAGTTC
GCTTCTCCAAGAAGCCGTCTCGTGTACAATACTCTTGCATTCCTCGTACA
CGGATGGTGTAATTTTTGCGGGGGAAGATGCTCCCAACGGCCCACAAAAA
TTAATCATGGCGACAATAATGTTGGCCCCTCGTTGGTGCTGCTGATGTGG
CGGGGCCCCTTGTTTTGTTCTGATTTTGTTCCTGTTTGGTGAGAGCAGAA
GAGACTGGAGGAGCAGGCGGCTAAGCTAAGGGCGGAAAACGAGGCGGTGG
TCGCAGAGCTCAGGTACGGCACAACTAACACCCGCTTTGACATGTTGTGT
TATCAGCGATAGGCGAAGGTGTACGGGCCAGGGTTTCGTGACGCTTTCTT
GTTCAACGCCAGGCAGCGTGGCGGCAACACCGTACTGCGTGAAAGACCGT
GTGGAACAACGGAACACCTCCTCTCCCTGTTAGCAGCGCAAAGTGCCACT
CCTGCATGAAAGCCGGCGGTGCGGTGGTTGCTGTGGCTCTTTTGTCTGTC
GTCTCTTGTGCCTTCTCTGGTTGATGCGGCTCTTTGTCTGTCTCTTCTAT
CCTCGGTGTCTGCTCTTGTCTCTCCCGTGGTGATGTAGTGCCCCCCCCCC
CCCCACTCTCCTCTCGACGCGATCTGTGTATACGGGTGGTTGCCGACCAA
AGGTGGAGGCAGAGAATCCCGAGGAGAGCGCCTTTNNNNNNNNNNTGATG
CGGCTCTTTGTCTTTCTTTTCTTTCCTCGGTTTCTGCTCTTGTCTCTCCC
GTGGTGATGTAGTGCCCCCCCCCCCCCCCACTCTCCTCTCGACGCGATCT
GTGTATACGTGTGGTTGCAGACAAAAGCTGGAGGCAGAGAATGCCGAGGA
GAGCGCCTTTGCCTTGTCTGTCGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10695:476..3600-

>mRNA_Ecto-sp9_F_contig10695.616.1 ID=mRNA_Ecto-sp9_F_contig10695.616.1|Name=mRNA_Ecto-sp9_F_contig10695.616.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10695:476..3600- (Ectocarpus species9 EcSCA_722f female)
CTTGACGTGCTAAGGAACGTGAACTTGGAGTGGGAGGAAAAGCTCAAGGA
GGCGTTGCGGACGAGCACGGAGGAGGCAGCGGCGAGGCTCAAGCTGGAGC
ACGAGCTTGACGTGCTAAGGAACGTGAACTTGGAGTGGGAGGAAAAGCTC
AAGGAGGCGTTGCGGACGAGCACGGAGGAGGCAGCGGCGAGGCTCAAGCT
GGAGCACGAGAACTCCGTCCTGAGCGCGAGGGTGAAAGAGCTCGACACGG
CGCGGGCGGCGAGCGAGGACCTGATCCTGGAGCTGTCCAAGGAGAAAAGC
CGCATGCTCGGGTCCTCTGGGGAGGCTAGCGACACCATCGAGAGCCTCGT
TGACGAGTACAGCCGGCTGAACTCCGTCCTGAGCGCGAGGGTGAAAGAGC
TCGACACGGCGCGGGCGGCGAGCGAGGACCTGATCCTGGAGCTGTCCAAG
GAGAAAAGCCGCATGCTCGGGTCCTCTGGGGAGGCTAGCGACACCATCGA
GAGCCTCGTTGACGAGTACAGCCGGCTGGCTTCCGAGCACACGGCGCAGC
GGCAGATGGACAGCGAAACCATTCAACGCCTCGAGAACGTCCGGGACGAA
CTGGCTTCCGAGCACACGGCGCAGCGGCAGATGGACAGCGAAACCATTCA
ACGCCTCGAGAACGTCCGGGACGAACTGGTGGAAAAACTCAAGGCCCACG
AGACGAACATCATGCAGCTGCTGCAGAGGGCCGAGGAGGACGGCGCTGTT
TCTCAGCAGATGTCGGAGCGCGACGTGGCGGGCAAGCCCGACGCGTCGCC
AGCCTCCGAGGAAGTCCCTCCGTCGGCCGAGGAGATCGAGGTGGAAAAAC
TCAAGGCCCACGAGACGAACATCATGCAGCTGCTGCAGAGGGCCGAGGAG
GACGGCGCTGTTTCTCAGCAGATGTCGGAGCGCGACGTGGCGGGCAAGCC
CGACGCGTCGCCAGCCTCCGAGGAAGTCCCTCCGTCGGCCGAGGAGATCG
AGAAGAGACTGGAGGAGCAGGCGGCTAAGCTAAGGGCGGAAAACGAGGCG
GTGGTCGCAGAGCTCAGAAGAGACTGGAGGAGCAGGCGGCTAAGCTAAGG
GCGGAAAACGAGGCGGTGGTCGCAGAGCTCAGACAAAAGCTGGAGGCAGA
GAATGCCGAGGAGAGCGCCTTTGCCTTGTCTGTCGCGACAAAAGCTGGAG
GCAGAGAATGCCGAGGAGAGCGCCTTTGCCTTGTCTGTCGCG
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