mRNA_Ecto-sp9_F_contig1067.600.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1067.600.1
Unique NamemRNA_Ecto-sp9_F_contig1067.600.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1067.600.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 7.350e-77
Identity = 166/198 (83.84%), Postives = 174/198 (87.88%), Query Frame = 1 
Query:    4 AAGTRETFREKLRRHLLPANWIKSVQLDGPTGADADASRRLTWNHGGGSGSSDSFDSGDGGSVCSNGVTGVESSDGKACCPSECGSCSTGCDRRRLGXXXXXXXXXXXXXXXXXXXLTYGHNDSXXXXXXXSDDGYEEYCDCNTRRALRSGSSXXXXXXXXXXXXTGPELEVECCADTIVDNGQMCDDVGSAPCVIGG 597
            AAGT ETFR+KLR HL PANW+KSVQLDGPTG +ADASRRLTWNHGGGSGSSDS+DSGDGG++CSNG+ GVESSDGKACCPSECGSCSTGCDRRRLG XXXXXXXXXXXXXXXXXX           XXXXSDDGYEEYCDCNTRRALRSGS     XXXXXXXXTGP+  VECCADTIVDNGQMCDDVGSAPCVIGG
Sbjct:    5 AAGTPETFRDKLRHHLSPANWMKSVQLDGPTGTEADASRRLTWNHGGGSGSSDSYDSGDGGAICSNGLAGVESSDGKACCPSECGSCSTGCDRRRLGWXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXSDDGYEEYCDCNTRRALRSGSFSDSGXXXXXXXXTGPDPAVECCADTIVDNGQMCDDVGSAPCVIGG 197
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BLAST of mRNA_Ecto-sp9_F_contig1067.600.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 4.300e-64
Identity = 149/204 (73.04%), Postives = 151/204 (74.02%), Query Frame = 1 
Query:    1 QAAGTRETFREKLRRHLLPANWIKSVQLDGPTGADADASRRLTWNHGGGSGSSDSFDSGDGGSVCSNGVTGVESSDGKACCPSECGSCSTGCDRRRLGXXXXXXXXXXXXXXXXXXXLTYGHNDSXXXXXXXSDDGYEEYCDCNTRRALRSGSSXXXXXXXXXXXXTGPELEVECCADTIVDNGQMCDDVGSAPCVIGGSTPEP 612
            QAAGT ETFREKLRRHL PANWIKSVQLDGPTG DADASRRLTWNHGG SGSSD  +S DGGS+CSNGVTGVESSDGKACCPSECGSCSTGCDRRRLG                XXX        XXXXXXX                      XXXXXXXXXXXXTGPELEVECCADTIVDNGQMCDDVGSAPCVIGGSTPEP
Sbjct:   40 QAAGTPETFREKLRRHLSPANWIKSVQLDGPTGNDADASRRLTWNHGGDSGSSDDSNSNDGGSMCSNGVTGVESSDGKACCPSECGSCSTGCDRRRLGGRDSSDNDTICGTRRRXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGPELEVECCADTIVDNGQMCDDVGSAPCVIGGSTPEP 238
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1067.600.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.450e-6
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:  400 DDGYEEYCDCNT--RRALRSGSSXXXXXXXXXXXXTG--------PELEVECCADTIVDNGQMCDDVGSAPCVIG 594
            DDGYEEYCDC+   R + R G S        XXXX          P  E+ECCADTIV++  MCD  GSAPCV+G
Sbjct:  369 DDGYEEYCDCSLSGRYSPRYGDSSDSGGSSDXXXXXXXQCXXXXXPAPELECCADTIVEDDAMCDIFGSAPCVLG 443
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1067.600.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized7.350e-7783.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
WSC4.300e-6473.04domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.450e-650.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1067contigEcto-sp9_F_contig1067:19727..21395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.2
Seed ortholog evalue2.1e-57
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000310.4
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size721
Cds size720
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1067.600.1prot_Ecto-sp9_F_contig1067.600.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1067 19727..21395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928285.4177356-CDS-Ecto-sp9_F_contig1067:19726..199071622928285.4177356-CDS-Ecto-sp9_F_contig1067:19726..19907Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 19727..19907 +
1692277821.1913528-CDS-Ecto-sp9_F_contig1067:19726..199071692277821.1913528-CDS-Ecto-sp9_F_contig1067:19726..19907Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 19727..19907 +
1622928285.4308062-CDS-Ecto-sp9_F_contig1067:20162..204611622928285.4308062-CDS-Ecto-sp9_F_contig1067:20162..20461Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 20163..20461 +
1692277821.2024896-CDS-Ecto-sp9_F_contig1067:20162..204611692277821.2024896-CDS-Ecto-sp9_F_contig1067:20162..20461Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 20163..20461 +
1622928285.4410338-CDS-Ecto-sp9_F_contig1067:20858..209731622928285.4410338-CDS-Ecto-sp9_F_contig1067:20858..20973Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 20859..20973 +
1692277821.2114956-CDS-Ecto-sp9_F_contig1067:20858..209731692277821.2114956-CDS-Ecto-sp9_F_contig1067:20858..20973Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 20859..20973 +
1622928285.459578-CDS-Ecto-sp9_F_contig1067:21270..213951622928285.459578-CDS-Ecto-sp9_F_contig1067:21270..21395Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 21271..21395 +
1692277821.2211452-CDS-Ecto-sp9_F_contig1067:21270..213951692277821.2211452-CDS-Ecto-sp9_F_contig1067:21270..21395Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 21271..21395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1067.600.1

>prot_Ecto-sp9_F_contig1067.600.1 ID=prot_Ecto-sp9_F_contig1067.600.1|Name=mRNA_Ecto-sp9_F_contig1067.600.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=240bp
QAAGTRETFREKLRRHLLPANWIKSVQLDGPTGADADASRRLTWNHGGGS
GSSDSFDSGDGGSVCSNGVTGVESSDGKACCPSECGSCSTGCDRRRLGGG
GSSDDDTICGTRKRRRRLTYGHNDSNDDDSNDSDDGYEEYCDCNTRRALR
SGSSSDSGSECECECETGPELEVECCADTIVDNGQMCDDVGSAPCVIGGS
TPEPTPEPTPEPTPEPTREPTPEPTAEPAADPTGETSVA*
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mRNA from alignment at Ecto-sp9_F_contig1067:19727..21395+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1067.600.1 ID=mRNA_Ecto-sp9_F_contig1067.600.1|Name=mRNA_Ecto-sp9_F_contig1067.600.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1669bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1067:19727..21395+ (Ectocarpus species9 EcSCA_722f female)
CAGGCCGCTGGCACCCGAGAGACCTTTCGCGAAAAACTCCGACGTCATCT
CTTACCCGCCAACTGGATCAAGAGCGTACAGCTGGACGGTCCTACAGGTG
CCGATGCTGACGCTAGTCGTCGTCTGACCTGGAACCACGGCGGCGGCAGT
GGCTCGAGCGACAGCTTCGACTCCGGCGACGGTACGTGCCCGGCAGCCGC
CCGCTTTGGCTCGCAAGAATACTGTTTTTTCTCAAGTAACTCCATCCCCC
CCCCCCACACACACGCGTTCCTTCCTGCTTAGCTGTGTACTGGGGCATGA
GAGATGGACAATGCTCTGTCGTGTCGAGGACGCGTGGTCCACGGTCTTAC
CGCTAAGGCATGCAAAACATAAAGAGTACGCCCCCCTGCGACGGTGTGCT
GCGTCCGCTCCGTTCCATGCGTCTAACGATGTGCAGGAGGAAGCGTGTGC
AGCAACGGCGTTACAGGCGTCGAGTCCTCCGACGGCAAGGCTTGCTGCCC
CTCCGAGTGCGGAAGCTGCTCTACCGGGTGCGACAGGCGCCGCCTTGGCG
GGGGGGGCTCGTCAGACGACGACACCATCTGCGGGACCCGGAAGCGCCGT
CGCCGCCTCACCTACGGGCACAACGACTCCAACGACGACGACTCCAACGA
CTCAGATGACGGTTACGAGGAGTACTGCGACTGCAACACGCGGCGTGCGC
TCCGCTCTGGTAGCTCCTCAGACTCCGGGTCAGAGGTGATGGGAACTGAA
AGCGTGCGGAACCTTGGCTTGACGAAAGGGGAAGACGAGGATGCATAGAC
GAGGGCAAGCCGTGCCCATGCAAAGAAGTTAACAAAGGGGTAGAGGTTTG
ATGCACCAAGATCGTCAGTGAAGAAAACGATCACGATTCCATGTCATTAG
AGGGGAGCAGTGGTTATCAAGCGAAGTCAAACGAGACGGCGTTATTGCGA
TCGATTTCGACGGGAAAACAAGTTGCCATACACATAAACAACGTAAGGAT
GTTGTGGAGAGGACCCCCCAAGAGGTTAAATGTTTACCATGGTGTCTCAA
GACGATGCGATTATTGATTTTCCTCTCGCAGGCGCCAAAAAGCTACCCCC
CCCCCCCTTCGGATTTCAACTCTAACTTGTAGTGCGAGTGCGAGTGTGAG
ACTGGGCCAGAGCTCGAGGTTGAATGCTGTGCGGACACCATCGTCGACAA
CGGCCAGATGTGCGACGACGTTGGATCGGCCCCTTGCGTCATCGGCGGTG
AGCCTTAGATACTTGTAGCAACGTTTCTCTTTCGTCCCCCGACGACGTTG
TTGTTGTTTGCCGTCCTGTACCTGCCTATCGTGACACGAACGCCGGTCCC
TAAGGCTTGGTCTTCCTTCTGCAGCCGCTCTCGTCTCTAGCCGTTGACGC
CAACTCCGAGCATTTAATAACTACCGAACTATTGCTTTATGAATTGCCAC
TGTGTGAGCCAGCCAGCCCACCCACAATGTATCGCTGGTTTCCGTGCCTA
ATCCTGATGACTACTTGTTTCACCGGCCGCCGGGTCCACTTTAGGGTCAA
CTCCAGAGCCTACGCCAGAGCCTACGCCAGAGCCTACGCCAGAGCCAACT
CGAGAGCCTACTCCCGAGCCTACTGCCGAGCCTGCTGCAGACCCCACTGG
TGAAACATCTGTCGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1067:19727..21395+

>mRNA_Ecto-sp9_F_contig1067.600.1 ID=mRNA_Ecto-sp9_F_contig1067.600.1|Name=mRNA_Ecto-sp9_F_contig1067.600.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1440bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1067:19727..21395+ (Ectocarpus species9 EcSCA_722f female)
CAGGCCGCTGGCACCCGAGAGACCTTTCGCGAAAAACTCCGACGTCATCT
CTTACCCGCCAACTGGATCAAGAGCGTACAGCTGGACGGTCCTACAGGTG
CCGATGCTGACGCTAGTCGTCGTCTGACCTGGAACCACGGCGGCGGCAGT
GGCTCGAGCGACAGCTTCGACTCCGGCGACGCAGGCCGCTGGCACCCGAG
AGACCTTTCGCGAAAAACTCCGACGTCATCTCTTACCCGCCAACTGGATC
AAGAGCGTACAGCTGGACGGTCCTACAGGTGCCGATGCTGACGCTAGTCG
TCGTCTGACCTGGAACCACGGCGGCGGCAGTGGCTCGAGCGACAGCTTCG
ACTCCGGCGACGGAGGAAGCGTGTGCAGCAACGGCGTTACAGGCGTCGAG
TCCTCCGACGGCAAGGCTTGCTGCCCCTCCGAGTGCGGAAGCTGCTCTAC
CGGGTGCGACAGGCGCCGCCTTGGCGGGGGGGGCTCGTCAGACGACGACA
CCATCTGCGGGACCCGGAAGCGCCGTCGCCGCCTCACCTACGGGCACAAC
GACTCCAACGACGACGACTCCAACGACTCAGATGACGGTTACGAGGAGTA
CTGCGACTGCAACACGCGGCGTGCGCTCCGCTCTGGTAGCTCCTCAGACT
CCGGGTCAGAGGAGGAAGCGTGTGCAGCAACGGCGTTACAGGCGTCGAGT
CCTCCGACGGCAAGGCTTGCTGCCCCTCCGAGTGCGGAAGCTGCTCTACC
GGGTGCGACAGGCGCCGCCTTGGCGGGGGGGGCTCGTCAGACGACGACAC
CATCTGCGGGACCCGGAAGCGCCGTCGCCGCCTCACCTACGGGCACAACG
ACTCCAACGACGACGACTCCAACGACTCAGATGACGGTTACGAGGAGTAC
TGCGACTGCAACACGCGGCGTGCGCTCCGCTCTGGTAGCTCCTCAGACTC
CGGGTCAGAGTGCGAGTGCGAGTGTGAGACTGGGCCAGAGCTCGAGGTTG
AATGCTGTGCGGACACCATCGTCGACAACGGCCAGATGTGCGACGACGTT
GGATCGGCCCCTTGCGTCATCGGCGTGCGAGTGCGAGTGTGAGACTGGGC
CAGAGCTCGAGGTTGAATGCTGTGCGGACACCATCGTCGACAACGGCCAG
ATGTGCGACGACGTTGGATCGGCCCCTTGCGTCATCGGCGGGTCAACTCC
AGAGCCTACGCCAGAGCCTACGCCAGAGCCTACGCCAGAGCCAACTCGAG
AGCCTACTCCCGAGCCTACTGCCGAGCCTGCTGCAGACCCCACTGGTGAA
ACATCTGTCGCGTGAGGTCAACTCCAGAGCCTACGCCAGAGCCTACGCCA
GAGCCTACGCCAGAGCCAACTCGAGAGCCTACTCCCGAGCCTACTGCCGA
GCCTGCTGCAGACCCCACTGGTGAAACATCTGTCGCGTGA
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