mRNA_Ecto-sp9_F_contig1062.567.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1062.567.1
Unique NamemRNA_Ecto-sp9_F_contig1062.567.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1062.567.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1062contigEcto-sp9_F_contig1062:3206..3514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928281.1248002-CDS-Ecto-sp9_F_contig1062:3205..35141622928281.1248002-CDS-Ecto-sp9_F_contig1062:3205..3514Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 3206..3514 +
1692277819.402878-CDS-Ecto-sp9_F_contig1062:3205..35141692277819.402878-CDS-Ecto-sp9_F_contig1062:3205..3514Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 3206..3514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1062.567.1prot_Ecto-sp9_F_contig1062.567.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1062 3206..3514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1062.567.1

>prot_Ecto-sp9_F_contig1062.567.1 ID=prot_Ecto-sp9_F_contig1062.567.1|Name=mRNA_Ecto-sp9_F_contig1062.567.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
TQSGLSSVDKDESMSSVSTPTSLEIWSPPVVVSPRTPFSPSRTASTLASA
ASRSPIGCSCVPRSREWCFSSARRTRDDGGCRGSFVAESTAPLPGFAGGP
AGL
back to top

mRNA from alignment at Ecto-sp9_F_contig1062:3206..3514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1062.567.1 ID=mRNA_Ecto-sp9_F_contig1062.567.1|Name=mRNA_Ecto-sp9_F_contig1062.567.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1062:3206..3514+ (Ectocarpus species9 EcSCA_722f female)
ACCCAGTCTGGACTCTCATCCGTGGACAAGGATGAGAGCATGTCCAGCGT
CTCAACGCCCACCTCTCTCGAGATTTGGTCGCCGCCGGTGGTAGTTTCTC
CGCGGACGCCGTTCTCGCCGTCCCGGACCGCCAGCACGCTGGCGTCTGCC
GCCAGCCGGAGCCCAATCGGTTGCTCGTGTGTGCCCCGCTCTCGCGAGTG
GTGCTTTTCCTCTGCCCGGCGAACCCGTGACGACGGCGGCTGCCGCGGTT
CGTTCGTGGCGGAATCAACGGCGCCGCTACCAGGTTTCGCCGGGGGGCCC
GCGGGTCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1062:3206..3514+

>mRNA_Ecto-sp9_F_contig1062.567.1 ID=mRNA_Ecto-sp9_F_contig1062.567.1|Name=mRNA_Ecto-sp9_F_contig1062.567.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1062:3206..3514+ (Ectocarpus species9 EcSCA_722f female)
ACCCAGTCTGGACTCTCATCCGTGGACAAGGATGAGAGCATGTCCAGCGT
CTCAACGCCCACCTCTCTCGAGATTTGGTCGCCGCCGGTGGTAGTTTCTC
CGCGGACGCCGTTCTCGCCGTCCCGGACCGCCAGCACGCTGGCGTCTGCC
GCCAGCCGGAGCCCAATCGGTTGCTCGTGTGTGCCCCGCTCTCGCGAGTG
GTGCTTTTCCTCTGCCCGGCGAACCCGTGACGACGGCGGCTGCCGCGGTT
CGTTCGTGGCGGAATCAACGGCGCCGCTACCAGGTTTCGCCGGGGGGCCC
GCGGGTCTGACCCAGTCTGGACTCTCATCCGTGGACAAGGATGAGAGCAT
GTCCAGCGTCTCAACGCCCACCTCTCTCGAGATTTGGTCGCCGCCGGTGG
TAGTTTCTCCGCGGACGCCGTTCTCGCCGTCCCGGACCGCCAGCACGCTG
GCGTCTGCCGCCAGCCGGAGCCCAATCGGTTGCTCGTGTGTGCCCCGCTC
TCGCGAGTGGTGCTTTTCCTCTGCCCGGCGAACCCGTGACGACGGCGGCT
GCCGCGGTTCGTTCGTGGCGGAATCAACGGCGCCGCTACCAGGTTTCGCC
GGGGGGCCCGCGGGTCTG
back to top