mRNA_Ecto-sp9_F_contig1056.513.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1056.513.1
Unique NamemRNA_Ecto-sp9_F_contig1056.513.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: Fructose-2,6-bisphosphatase (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD7_ECTSI)

HSP 1 Score: 625 bits (1612), Expect = 7.890e-218
Identity = 379/407 (93.12%), Postives = 381/407 (93.61%), Query Frame = 1 
Query:   19 VAADRNAEEHQRFDPVMTSGQVVSTDT--KVNLADEALYRHYPPVNPSSSGAASGSGSILDAANAYTFETLNRKLASTWCSPSLPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIPPTSRLRGSGGGAECGPGAAPTSQLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRTHETAMRIAENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILDRGKELNLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEVRRSGPAGARSYRLLPARPS 1233
            +AADRNAEEHQ FDPVMT GQVVSTDT  KVNLADEALYRHYPPVNPSSSGAASG GSILDAANAYTFETLNRKLASTWCSPSLPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               AEC PGAAPTSQLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLR HETAMRIAENNEMCLKLAQEN PVPPVPP+TSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKG LAALKEAWDEGVFDRAAEGGENLVEVQARARAAVE ILDRGKELNLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEVRRSGPA ARSYRLLPARPS
Sbjct:    1 MAADRNAEEHQLFDPVMTCGQVVSTDTTNKVNLADEALYRHYPPVNPSSSGAASGGGSILDAANAYTFETLNRKLASTWCSPSLPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAECRPGAAPTSQLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRAHETAMRIAENNEMCLKLAQENDPVPPVPPSTSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGCLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVETILDRGKELNLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEVRRSGPAAARSYRLLPARPS 407
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0U4_HETAK)

HSP 1 Score: 147 bits (372), Expect = 4.490e-36
Identity = 94/249 (37.75%), Postives = 129/249 (51.81%), Query Frame = 1 
Query:  475 PGAAPTSQLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRTHETAMRIAE-NNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILDRGKEL-------NLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEVRRSGPAG 1197
            PG  P+   +F+ RHG+TDMN  G LQGRGVNA LN  G +Q + LG F++N  FDT++ S+L+R++ETA  I + NN MC                         K TP            + +   L+ELSWGELEG+ ++ EP++ +     + W EG  D  A  GE+  EV ARAR A+EAI+ +           +LVVSHGRT+R L+  L G+ M+       +PNCG Y       G  G
Sbjct:   80 PGLDPSRHYVFIARHGQTDMNAGGFLQGRGVNANLNDIGREQGRALGDFLKNTKFDTISCSTLIRSYETAEEILKMNNFMC-------------------------KATP------------IAQYVDLEELSWGELEGQCAREEPWRSKFKHTVQMWREGKNDYKAVNGESPNEVAARARGALEAIVAQXXXXXXXXXXRHLVVSHGRTIRSLLDGLAGVRMES------VPNCGLYCFAWGGGGGRG 285
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWM8_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.060e-29
Identity = 80/235 (34.04%), Postives = 130/235 (55.32%), Query Frame = 1 
Query:  496 QLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDT----VTSSSLLRTHETAMRIA-----ENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILDRGKELNLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILE 1173
            QL++LVRHG+TDMNK G LQGRGVNA LN  G  QA   G+F+ ++        + SS+L R  +TA  I+       +E+ +        +       S  +     + P+     D+   ++   E  +ELSWG +EG+  K EP++  L  +K+ WD G  D +  GGE+ ++V+ R+  A++ +L +G + N++VSHGRT+R+++ SL G  ++      K+PN   YI++
Sbjct:   84 QLIYLVRHGQTDMNKRGCLQGRGVNADLNVHGQFQAMTAGKFLSSLGSTDQDVFLCSSTLSRAKQTAQAISTFLPTSRDEVAIMRKSVKNALSAY--GGSEVQSAPVSSYPSSPTSSDE---QIPSYEDFEELSWGIMEGKSWKEEPYRTMLQEVKKQWDSGNLDASILGGESQLQVRKRSLQALDTVLSKGHKHNIIVSHGRTIRVMLNSLIGKTLE------KVPNTAIYIIQ 307
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: Probable (phosphoglycerate mutase n=1 Tax=bacterium A37T11 TaxID=1855384 RepID=A0A1H8CC29_9BACT)

HSP 1 Score: 121 bits (304), Expect = 9.440e-28
Identity = 77/232 (33.19%), Postives = 116/232 (50.00%), Query Frame = 1 
Query:  493 SQLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRTHETAMRIAENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILDRGKE-LNLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEVRRS 1185
            ++ L+++RHGETD+NK G +QGRGVN+PLN  GL QA    R+ ++VPFD V +S+LLRTH+T     E                                          A V   +L+GLDE+ WG  EG +      +G  +A+  AW +G  + + EGGE  ++V  R   A+  IL +  + + LV  HGR +RIL+  L+G  + +M +    P+  T + +V  S
Sbjct:    2 NKTLYIIRHGETDLNKRGIVQGRGVNSPLNETGLKQAAAFYRYYKDVPFDRVYTSTLLRTHQTVASFIE------------------------------------------AGVPWTQLQGLDEIGWGNYEGLEQSAGLLEG-FSAVTSAWAQGQLNVSVEGGETPLQVVERQNQAINTILSKEDDKVVLVCMHGRAMRILLCWLSGKPLREMDDF---PHANTSLYKVHYS 187
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: Histidine (phosphatase family protein n=2 Tax=unclassified Pedobacter TaxID=2628915 RepID=A0A2R7KLS8_9SPHI)

HSP 1 Score: 120 bits (300), Expect = 3.340e-27
Identity = 77/230 (33.48%), Postives = 113/230 (49.13%), Query Frame = 1 
Query:  502 LFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRTHETAMRIAENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILDRGKE-LNLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEVRRSG 1188
            L+++RHGET++NK G +QGRG+N+ LN  G  QA+   +  +N+PFD + +SSL RTH+T  +   +                                           +   +L GLDEL+WGE EG+ S  E        + E W  G +D   EGGE+  EV  R   AV+ I  + KE L LV  HGR +R+L+  LTG     M++MG+ P+  T + +V  +G
Sbjct:    5 LYIIRHGETELNKHGIVQGRGINSDLNDTGRAQAEAFYQMYKNIPFDKIYTSSLKRTHQTVHKFIASG------------------------------------------LPWEQLSGLDELAWGEWEGKPSS-EHALAVFRDIVEKWQNGDYDAKFEGGESPAEVAVRLTEAVDHIKGQAKEKLVLVCMHGRAMRLLLCLLTG---KPMSDMGEFPHQNTTLYKVALTG 188
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: histidine (phosphatase family protein n=1 Tax=Olivibacter sitiensis TaxID=376470 RepID=UPI00048273A8)

HSP 1 Score: 117 bits (294), Expect = 2.190e-26
Identity = 75/233 (32.19%), Postives = 115/233 (49.36%), Query Frame = 1 
Query:  496 QLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRTHETAMRIAENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILDRGKELN--LVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEVRRSG 1188
            ++L+++RHGETD+NK G +QGRGVN+PLN  GL QA+    F ++VPF+ + +S+LLRTH+T     ++                                           +   +LEGLDE+SWG  EG++   E   G LA L + W  G  D   E GE   +V+ R   A++ IL+     +  LV  HGR +R+L+  L G+ + +M    + P+  T + +V   G
Sbjct:    3 KILYIIRHGETDLNKKGIVQGRGVNSPLNETGLKQAELFYEFYKSVPFEKLFTSTLLRTHQTVDGFIQSG------------------------------------------IPWEQLEGLDEISWGIYEGKEQTEEVLSGFLA-LTQGWCNGELDSCVENGETPNQVKKRQEQAIDYILNTMSTHSKVLVCMHGRAIRLLLCLLLGIDLSRMD---EFPHTNTALYKVLYDG 189
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: Putative (phosphoglycerate mutase n=1 Tax=Pedobacter nutrimenti TaxID=1241337 RepID=A0A318UNX0_9SPHI)

HSP 1 Score: 117 bits (293), Expect = 2.900e-26
Identity = 77/226 (34.07%), Postives = 109/226 (48.23%), Query Frame = 1 
Query:  502 LFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRTHETAMRIAENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILDRGKE-LNLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEV 1176
            L+++RHGETD+NK G +QGRG+N+ LN  G  QA+   +  +++PFD V +S+L RTH+T  +  E+                                           +   +L GLDEL+WGE EG+ S  E        L E W  G +D   EGGE+  EV  R   AV  I    KE L LV  HGR +R+L+  L+G     M++MG+ P+  T +  V
Sbjct:    5 LYIIRHGETDLNKQGIVQGRGINSDLNDTGRAQAEAFFQLYKDLPFDKVYTSTLKRTHQTVNKFIESG------------------------------------------LPWEQLSGLDELAWGEWEGKPSS-EQALAVFRELVEQWQSGDYDAKFEGGESPAEVAVRLTEAVNHIKSHKKEQLVLVCMHGRAMRLLLCLLSG---KPMSDMGEFPHQNTTLYRV 184
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: Phosphoglycerate (mutase n=1 Tax=Pelobium manganitolerans TaxID=1842495 RepID=A0A419S497_9SPHI)

HSP 1 Score: 117 bits (292), Expect = 3.750e-26
Identity = 77/230 (33.48%), Postives = 110/230 (47.83%), Query Frame = 1 
Query:  487 PTSQLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRTHETAMRIAENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILD-RGKELNLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILE 1173
            PT + L+++RHGET++NK   +QGRGV+A LN  G  QA+   +  +NVPFD + +S+L RTH+T  +  E                                            +   +L GLDE++WG  EG+    E       AL E+W++G +D  AEGGE+  EV  R   A+  IL  R ++  LV  HGR LR+L+  L     DQM +     N   YIL+
Sbjct:    4 PTIKRLYIIRHGETELNKNKVVQGRGVDADLNDTGRAQAEAFYQRYKNVPFDKIYTSALKRTHQTVAKFIEKG------------------------------------------IAWEQLPGLDEIAWGNYEGKKHSPE-LDASFIALVESWNKGQYDNKAEGGESPNEVHIRQMEAIAHILSHRDEKTVLVCMHGRALRLLLCGLMKKPFDQMEDFPH-QNTSLYILD 189
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: Histidine (phosphatase family protein n=2 Tax=Sphingobacteriaceae TaxID=84566 RepID=A0A4Q3EV13_9SPHI)

HSP 1 Score: 116 bits (290), Expect = 6.590e-26
Identity = 71/234 (30.34%), Postives = 113/234 (48.29%), Query Frame = 1 
Query:  490 TSQLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRTHETAMRIAENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILDRGKELNLVVS-HGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEVRRSG 1188
            T + L+++RHGETD+NKAG +QGRG+N  LN  G  Q +   R  +NVPFD + +S L RTH+T     ++                                           +   +L GLDE++WG  EG+ +  E  +GR   + ++W +G  D   E GE+  EVQ R + A++ I+   +E  +++  HGR +R+L+  L+ L + +M N    P+  T +  V   G
Sbjct:    2 TKKTLYIIRHGETDLNKAGIVQGRGMNTDLNETGRKQGEAFYRAYKNVPFDKIYTSVLKRTHQTVKGFIDSG------------------------------------------IPWEQLPGLDEMAWGNYEGK-AVSEETRGRFKKIMQSWKDGDLDVRFENGESPNEVQTRQKEAMKVIMSHPEESTILICMHGRAMRLLLCLLSNLSLTEMDNY---PHRNTTLYRVNFDG 189
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Match: Probable (phosphoglycerate mutase n=1 Tax=Ekhidna lutea TaxID=447679 RepID=A0A239GS41_9BACT)

HSP 1 Score: 113 bits (283), Expect = 5.140e-25
Identity = 74/231 (32.03%), Postives = 109/231 (47.19%), Query Frame = 1 
Query:  493 SQLLFLVRHGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLLRTHETAMRIAENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCCGDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDRAAEGGENLVEVQARARAAVEAILDRGKELNLVVSHGRTLRILMLSLTGLGMDQMTNMGKIPNCGTYILEVRRS 1185
            S+ +F++RHGETD NK G +QGRGVNA +N AG +QA+  G  + ++PFD V +S+L+RT ET  +   N                  P TS                          L+G DE+SWG  EG+++  +  K   A     W  G       GGEN +EV  R ++A++ +L+   E  L+  HGR +R+L+       ++ M       NC  Y+L  R S
Sbjct:    3 SKTIFILRHGETDFNKNGMVQGRGVNASINEAGKEQARKAGAMLADIPFDHVFTSALIRTKETVGQFIHNGT----------------PVTS--------------------------LDGFDEISWGNQEGKEASYDA-KNLYADTVNGWRRGELHLNVGGGENPLEVMERQQSAMQQVLETDGENILICMHGRAMRVLLSWTLNYPLNFMDGFPHA-NCSYYVLGYRGS 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1056.513.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Fructose-2,6-bisphosphatase7.890e-21893.12n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD7_ECTSI[more]
Hypothetical4.490e-3637.75protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical4.060e-2934.04protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Probable9.440e-2833.19phosphoglycerate mutase n=1 Tax=bacterium A37T11 T... [more]
Histidine3.340e-2733.48phosphatase family protein n=2 Tax=unclassified Pe... [more]
histidine2.190e-2632.19phosphatase family protein n=1 Tax=Olivibacter sit... [more]
Putative2.900e-2634.07phosphoglycerate mutase n=1 Tax=Pedobacter nutrime... [more]
Phosphoglycerate3.750e-2633.48mutase n=1 Tax=Pelobium manganitolerans TaxID=1842... [more]
Histidine6.590e-2630.34phosphatase family protein n=2 Tax=Sphingobacteria... [more]
Probable5.140e-2532.03phosphoglycerate mutase n=1 Tax=Ekhidna lutea TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1056contigEcto-sp9_F_contig1056:2776..7698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score597.4
Seed ortholog evalue4.7e-168
Seed eggNOG ortholog2880.D8LFD7
KEGG koko:K06236
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko04516
Hectar predicted targeting categoryother localisation
Exons5
Model size2232
Cds size1170
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928271.7676554-UTR-Ecto-sp9_F_contig1056:2775..37711622928271.7676554-UTR-Ecto-sp9_F_contig1056:2775..3771Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1056 2776..3771 -
1692277815.8235605-UTR-Ecto-sp9_F_contig1056:2775..37711692277815.8235605-UTR-Ecto-sp9_F_contig1056:2775..3771Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1056 2776..3771 -
1622928271.887964-UTR-Ecto-sp9_F_contig1056:7632..76981622928271.887964-UTR-Ecto-sp9_F_contig1056:7632..7698Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1056 7633..7698 -
1692277815.8995686-UTR-Ecto-sp9_F_contig1056:7632..76981692277815.8995686-UTR-Ecto-sp9_F_contig1056:7632..7698Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1056 7633..7698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928271.8036206-CDS-Ecto-sp9_F_contig1056:3771..39311622928271.8036206-CDS-Ecto-sp9_F_contig1056:3771..3931Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 3772..3931 -
1692277815.8347232-CDS-Ecto-sp9_F_contig1056:3771..39311692277815.8347232-CDS-Ecto-sp9_F_contig1056:3771..3931Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 3772..3931 -
1622928271.819536-CDS-Ecto-sp9_F_contig1056:4210..43211622928271.819536-CDS-Ecto-sp9_F_contig1056:4210..4321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 4211..4321 -
1692277815.8433993-CDS-Ecto-sp9_F_contig1056:4210..43211692277815.8433993-CDS-Ecto-sp9_F_contig1056:4210..4321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 4211..4321 -
1622928271.8398695-CDS-Ecto-sp9_F_contig1056:4607..47411622928271.8398695-CDS-Ecto-sp9_F_contig1056:4607..4741Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 4608..4741 -
1692277815.8527336-CDS-Ecto-sp9_F_contig1056:4607..47411692277815.8527336-CDS-Ecto-sp9_F_contig1056:4607..4741Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 4608..4741 -
1622928271.8576493-CDS-Ecto-sp9_F_contig1056:5627..57801622928271.8576493-CDS-Ecto-sp9_F_contig1056:5627..5780Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 5628..5780 -
1692277815.8685699-CDS-Ecto-sp9_F_contig1056:5627..57801692277815.8685699-CDS-Ecto-sp9_F_contig1056:5627..5780Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 5628..5780 -
1622928271.8721418-CDS-Ecto-sp9_F_contig1056:7020..76321622928271.8721418-CDS-Ecto-sp9_F_contig1056:7020..7632Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 7021..7632 -
1692277815.881053-CDS-Ecto-sp9_F_contig1056:7020..76321692277815.881053-CDS-Ecto-sp9_F_contig1056:7020..7632Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 7021..7632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1056.513.1prot_Ecto-sp9_F_contig1056.513.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1056 3772..7632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1056.513.1

>prot_Ecto-sp9_F_contig1056.513.1 ID=prot_Ecto-sp9_F_contig1056.513.1|Name=mRNA_Ecto-sp9_F_contig1056.513.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=390bp
MTSGQVVSTDTKVNLADEALYRHYPPVNPSSSGAASGSGSILDAANAYTF
ETLNRKLASTWCSPSLPSSSAAASCCPPQDPTTNNNNNAMKCLTDNSGNA
AAGNTTTTTTRSPTPAAGGIPPTSRLRGSGGGAECGPGAAPTSQLLFLVR
HGETDMNKAGRLQGRGVNAPLNGAGLDQAQGLGRFVRNVPFDTVTSSSLL
RTHETAMRIAENNEMCLKLAQENGPVPPVPPATSTKEQEGEKTTPADFCC
GDKAQVRVRRLEGLDELSWGELEGEDSKLEPFKGRLAALKEAWDEGVFDR
AAEGGENLVEVQARARAAVEAILDRGKELNLVVSHGRTLRILMLSLTGLG
MDQMTNMGKIPNCGTYILEVRRSGPAGARSYRLLPARPS*
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mRNA from alignment at Ecto-sp9_F_contig1056:2776..7698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1056.513.1 ID=mRNA_Ecto-sp9_F_contig1056.513.1|Name=mRNA_Ecto-sp9_F_contig1056.513.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4923bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1056:2776..7698- (Ectocarpus species9 EcSCA_722f female)
CAGCAGCAGGGCTCGGTAGTGGCCGCGGATCGAAACGCCGAAGAACACCA
GCGTTTCGACCCAGTCATGACTTCCGGACAAGTTGTTTCGACGGACACTA
AGGTGAATTTGGCGGACGAGGCTCTGTACCGCCACTACCCACCGGTGAAC
CCCAGCAGCAGCGGCGCTGCCAGCGGGAGCGGAAGCATCCTCGACGCCGC
GAACGCCTACACCTTCGAGACTCTCAACCGCAAGCTCGCCAGCACGTGGT
GCTCCCCATCTCTCCCCTCCTCTTCCGCGGCAGCCTCGTGCTGCCCTCCC
CAAGACCCCACGACCAACAACAACAACAACGCAATGAAGTGTCTCACCGA
CAACTCAGGCAACGCCGCCGCCGGCAACACCACCACCACCACCACCCGCT
CGCCTACACCGGCTGCGGGGGGGATACCACCGACGTCTCGGCTCCGCGGC
AGCGGCGGTGGCGCCGAATGCGGACCGGGAGCGGCCCCGACCTCGCAGCT
GCTGTTCCTCGTTCGCCACGGGGAGACGGACATGAACAAGGCCGGGAGGT
TGCAGGGGCGCGGCGTGAACGCGCCCCTCAACGGCGCCGGCCTGGATCAA
GCGCAGGGCCTGGGGCGGTTTGTCCGAAACGTTCCGTTCGACACGGTCAC
CTCCAGCTCGCTGCTCCGGACACACGAGGTGTGACACGCAGCAGTAGATG
TGCCGATGGGTGCCTTTTGATTGGTCGATTTCGGGCGCCGGGAGTAGTGA
TACAGAAAATGGGTTCGCAGGCCCCCCCTCCCGTCACAGCCGTAGATAGC
AGGTACCAACGCAGTCTATTTAGTGAACGCGGGAGACAGCCTTTACGTTG
ATGTAGCTCAAGTACCATGTAGTTTGCAGTCCTCACCCTCGAGTTATAGC
GCCATCCTTTCCAAATTTTTTTTTTGTTGGTGGGGGATAGATACCAGGAT
ACGGCAGCGGCGCTCTCTAGTATTGCCGGGTACGGCGCAACCGTGCCAGC
GCGGGTTATATTCGCGGAGGCACAAATACCGACGGCGGCGCTTTGGCCAC
ACTCACAGCACTTGCAAGGGAAGAGGGAACGACGTTATCTAGGGGTATCC
AGACTTGGCGAAATAATGACCAACACTTTAGTCACGTCGTATGTAGTCGT
ACAACGCATGCCCATGTGTACCATTTTGTCAGCCTTCTCGACTATGCAAG
CTCAACACTTGATCATGCTGCCCTGTGGAATGAGTGAGTCGGAGTCGGGG
GACCAGGTTTTGGTTTCCTTACCGCCATTTGTTCTTACGAGGGCAAGGGA
TACCTGGCTGTAATAGTTGTCGTTTGCCCCCTGTGTCTTTCTCCGTGCGG
TATGCGTCTCGACAACATGCTACGCACGGACGTTGTGGTAGCCGGTTTTG
ATAAACCGACACTGATATGTACGTGCTTTGAAATAGTTGTTAGCGATGGT
TTCGGTGTCATGTTTATTTGGTCTGCTGAAGTCGCAGCTGCTTGACTTGG
GGCTGGCAGATCTATGTCCTACATTTGATTGTTGTGGTTTCCCCACCTCC
CCCCTTCCCCTCCTCTCTCTTCCTGCCTCATACTCCCTCTCTTTCCCCTC
ATGGAACCATAGAGTATGAACGATTTGCCTCAGAGTTGTACTAGAATGGC
AAATATTAGTCCCATGTGGAAGTGTTCCGCAGGCGGTGCCGGTTTTGCCT
CGTCGCCTCGTTGTCGAAACATCTTCTACCTGGATGCTCACGAACCCGGG
ATGCCTTATTGATGGCTTTCTTCATGACTTTCAGCGATCAAGAGAGCTAC
GTGAACCTAGTTCTACCTCCAATGGCAATCCACACACATCATGTATTAAC
TTCTTCGTGATAGAACAAAAAGATACAAAACTCCCGCCTCCGACGGCATT
ATGCTTGTGGTTCGGCAGACGGCGATGCGAATCGCGGAGAACAACGAGAT
GTGCCTGAAACTGGCGCAGGAGAATGGCCCGGTTCCTCCTGTTCCCCCAG
CGACATCGACGAAGGAGCAAGAGGGAGAGAAGACCACGCCCGCCGACTTC
TGCTGCGGCGACAAGGCGCAGGTATTCACCGTTGATGCCGTAGATGTCTC
GCTCGACGGTGGTTGAAGACAGGTTTCCCTGGCTCCGTACCTTGCGCTCG
CCTGTACGTGGTTGGAAGAGTCCAGCGTGTGGAAGCACATGTTGCTGTTG
TTTTTTGGTGCTGGAAGACTTGAGAATCGTGTCCTCGCAGTGGGGAGGCG
ATGATGACTCCGGCGACACGCGTAGTAATCTGGCGTGAGATGTTTCCAGT
GTTGTGGTTTCAACCACAACCGATTGTGTCCGGTGTTCAGACTAACCCGA
ATTGCGGTCTGAATGAAGCGGGCGATGAGAGTGCGGGCAGCCGCCGCGTG
TATCCCCCTGCGACACTCGGTGCGGCGCCTGACAGCTCCAGCCTCACCGA
AGACATGGAAAATAGGTATATCTACGACTGCGCACGATCTCCTCCGTCTC
CTTTCATTTGGCCGCGTCAAGATTCCGAGAGCCCCGCGTGCAGATTAATT
GCTCGAACAGGTTGTCCCCAAGAAGCGGCAACCCCGCGTTGTGCTCAAAC
CAAACCCCGGAATCGAGGAATCTAAAGGCCATAGGATCAACATGAGTCAT
TCTACATGCATTGCTAGCAGTTTTTACACCCTTCTCTATTCTCAGATACA
AACTGGGCAACGGATCGGACGAAGACACGACGGGACAACTTATAACTAAG
AAGACGGAGACCTTTTTTGAAAAAATTGCCTGCAATCAGGGAGAGGAACC
CTTCTGTGTGACCACGGGTTGGAGTACACGGCAAAAGTGCTGTGAGCGCC
GATTTGAAGTGAAGGAAAAAAAAAATCACAGAAAGACCACCCGTTCGGGA
GAATACTGTACCACAGTCGAAGGGAGTGTTTCACTCACGCCGGTTTTACT
ATCACAGGTGCGCGTGCGAAGGTTGGAGGGCCTTGATGAGCTTTCTTGGG
GCGAGCTCGAGGGGGAGGACTCCAAGCTGGAGCCGTTCAAAGGACGTCTC
GCTGCGCTGAAGGAGGCCTGGGACGAAGGCGTGTTTGATCGGTGGGTGGT
GGAAGTGTCCGCCTTGCCTACCACTTGCAACCAGCGGGCGCTCTTGGTCA
GAGTCCGTTTTAGGCACCCGTCCCCGATTTGCTTGTAGACCAATTCTCTT
TTATTCTTGAACAACGTGTCGACCGGCCTACTGTGCAGTGTGAAGACTAG
CAAAGAGTTTTAATGTTAATTGAAGTTTCCCCTCTACGGGACAAAACCGG
CGTCGCTTGTCCCATCCACTTGATGCTTTTACCCGCGCGACGATTCTTAT
ATGATTTTCGCCTTCGTGCGTGCACAGAGCTGCCGAGGGCGGGGAGAACT
TGGTGGAGGTGCAGGCTCGAGCCAGAGCGGCCGTGGAGGCCATTCTGGAC
AGGGGGAAGGAGCTGAACCTCGTCGTTAGCCACGGCAGGTGAGAATATCG
CGATCGGCGTCGAGACAACTTTGCCTCTTCGGGCTTTATGGTGGTTCGGT
TTGGACGATATTTTCTCCCGGTGCGTCATGGCCGTACGAGCGCCAACCAA
GCTTCAGTCCGTGCTCCATCGCAATCCCTAGAGTGTTGGATCTTGTATTT
CTGTGTGAACATTTTGTTTGCCAAGCATCAAGGACGGAGCAATTGTGCTT
GTTCCGTTGCGCATCTCATATCCGGTGGCCGTGTGTCGTTTACCCTTATC
GTGTGCACACAACGTAGGACGCTGCGGATCCTGATGCTATCCCTCACGGG
CCTCGGCATGGACCAGATGACCAACATGGGAAAGATCCCCAACTGCGGGA
CGTACATCCTGGAAGTCCGGCGATCAGGCCCGGCTGGGGCTCGATCCTAC
CGCCTCCTCCCTGCCCGTCCTTCATGACTGGCTCTGGTCGCTTCTTGACC
TTGGCTGCTCTTGCCGTGGCACCTTTGGGCATTGGTGACATTTCATTGCT
ATTCTACCTCGAACTCTTGGTTGTGCAAGAGAGTGATTTTTGTTGTGTTC
TTTGTAAAGAAACATGAAAGAAAAAATATCAGAGCGAGTGCCGCCGGAGC
GACGGCGTTTTTGACATGGTTGATACTGATACATACCTTGATCATTTTTT
GAGGTTTGGTATTGGTATGTTTACACGTATTTCGCTCTTTTGTTACGACA
GGGCGAGCGTTCTCCCTGCGACTTCAGCTGAGTATACTGTCGATGATACA
CATTTTGATCATCACCCCTTTTGTGAAACGGTGCATGGTTGTATTGATAC
ATGTGGTCGTGAAGACTGTTTTTAAGGTTCTCTTTGTGGTCATGTGCATG
GTCTATCTCGTTAGACATGAACCGGGCTTGTCCTCGCGTTGTGTCGGCTC
CGAGGTTGTCGACCTTCCCACGGCGCTTTTTCGATCTCCGTAGATACCTG
CTGGGCGTTTGCGTCGACGCGAAGTCGGCAGGGGTTCATCTCGCTGTATC
GAATTTCGTGCACGCGGTTCAGCCAGTCTTGTGTTTGCTGAGCACCAAGC
TTTTAGGGCCGTCAGTAGCGCAAAACATAACGGCGCATACGTAGGCAGGT
GTTGCAGTACAGCAGTTTTAGCTTAATAGCTGACTAGTCTTTAAGTGTAC
AGCAGTGTAGTGGCGTCTAACTCGTGCTTGGTGTGTCGCTCCCCGCCGCC
ATTGTATATTCTTGCTCTATGGAAGAAGAACGCACCAGAGGGAAAGACGG
ATTGCATCCGTGCAGCACAGAGCACACGGACATCGAACCGGCGGGTCGTG
AGCTGTTGTATTTGATGCTGTGTCACCAACGTCGTCAAGTTGTATTTAGA
GTGTGATATGCTGAGGGCAGGACACCGCACGAGTACTACTACTTGAATCG
GAAAAACGCTGTTGCACACGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1056:2776..7698-

>mRNA_Ecto-sp9_F_contig1056.513.1 ID=mRNA_Ecto-sp9_F_contig1056.513.1|Name=mRNA_Ecto-sp9_F_contig1056.513.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2340bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1056:2776..7698- (Ectocarpus species9 EcSCA_722f female)
ATGACTTCCGGACAAGTTGTTTCGACGGACACTAAGGTGAATTTGGCGGA
CGAGGCTCTGTACCGCCACTACCCACCGGTGAACCCCAGCAGCAGCGGCG
CTGCCAGCGGGAGCGGAAGCATCCTCGACGCCGCGAACGCCTACACCTTC
GAGACTCTCAACCGCAAGCTCGCCAGCACGTGGTGCTCCCCATCTCTCCC
CTCCTCTTCCGCGGCAGCCTCGTGCTGCCCTCCCCAAGACCCCACGACCA
ACAACAACAACAACGCAATGAAGTGTCTCACCGACAACTCAGGCAACGCC
GCCGCCGGCAACACCACCACCACCACCACCCGCTCGCCTACACCGGCTGC
GGGGGGGATACCACCGACGTCTCGGCTCCGCGGCAGCGGCGGTGGCGCCG
AATGCGGACCGGGAGCGGCCCCGACCTCGCAGCTGCTGTTCCTCGTTCGC
CACGGGGAGACGGACATGAACAAGGCCGGGAGGTTGCAGGGGCGCGGCGT
GAACGCGCCCCTCAACGGCGCCGGCCTGGATCAAGCGCAGGGCCTGGGGC
GGTTTGTCCGAAACGTTCCGTTCGACACGGTCACCTCCAGCTCGCTGCTC
CGGACACACGAGATGACTTCCGGACAAGTTGTTTCGACGGACACTAAGGT
GAATTTGGCGGACGAGGCTCTGTACCGCCACTACCCACCGGTGAACCCCA
GCAGCAGCGGCGCTGCCAGCGGGAGCGGAAGCATCCTCGACGCCGCGAAC
GCCTACACCTTCGAGACTCTCAACCGCAAGCTCGCCAGCACGTGGTGCTC
CCCATCTCTCCCCTCCTCTTCCGCGGCAGCCTCGTGCTGCCCTCCCCAAG
ACCCCACGACCAACAACAACAACAACGCAATGAAGTGTCTCACCGACAAC
TCAGGCAACGCCGCCGCCGGCAACACCACCACCACCACCACCCGCTCGCC
TACACCGGCTGCGGGGGGGATACCACCGACGTCTCGGCTCCGCGGCAGCG
GCGGTGGCGCCGAATGCGGACCGGGAGCGGCCCCGACCTCGCAGCTGCTG
TTCCTCGTTCGCCACGGGGAGACGGACATGAACAAGGCCGGGAGGTTGCA
GGGGCGCGGCGTGAACGCGCCCCTCAACGGCGCCGGCCTGGATCAAGCGC
AGGGCCTGGGGCGGTTTGTCCGAAACGTTCCGTTCGACACGGTCACCTCC
AGCTCGCTGCTCCGGACACACGAGACGGCGATGCGAATCGCGGAGAACAA
CGAGATGTGCCTGAAACTGGCGCAGGAGAATGGCCCGGTTCCTCCTGTTC
CCCCAGCGACATCGACGAAGGAGCAAGAGGGAGAGAAGACCACGCCCGCC
GACTTCTGCTGCGGCGACAAGGCGCAGACGGCGATGCGAATCGCGGAGAA
CAACGAGATGTGCCTGAAACTGGCGCAGGAGAATGGCCCGGTTCCTCCTG
TTCCCCCAGCGACATCGACGAAGGAGCAAGAGGGAGAGAAGACCACGCCC
GCCGACTTCTGCTGCGGCGACAAGGCGCAGGTGCGCGTGCGAAGGTTGGA
GGGCCTTGATGAGCTTTCTTGGGGCGAGCTCGAGGGGGAGGACTCCAAGC
TGGAGCCGTTCAAAGGACGTCTCGCTGCGCTGAAGGAGGCCTGGGACGAA
GGCGTGTTTGATCGGTGCGCGTGCGAAGGTTGGAGGGCCTTGATGAGCTT
TCTTGGGGCGAGCTCGAGGGGGAGGACTCCAAGCTGGAGCCGTTCAAAGG
ACGTCTCGCTGCGCTGAAGGAGGCCTGGGACGAAGGCGTGTTTGATCGAG
CTGCCGAGGGCGGGGAGAACTTGGTGGAGGTGCAGGCTCGAGCCAGAGCG
GCCGTGGAGGCCATTCTGGACAGGGGGAAGGAGCTGAACCTCGTCGTTAG
CCACGGCAGAGCTGCCGAGGGCGGGGAGAACTTGGTGGAGGTGCAGGCTC
GAGCCAGAGCGGCCGTGGAGGCCATTCTGGACAGGGGGAAGGAGCTGAAC
CTCGTCGTTAGCCACGGCAGGACGCTGCGGATCCTGATGCTATCCCTCAC
GGGCCTCGGCATGGACCAGATGACCAACATGGGAAAGATCCCCAACTGCG
GGACGTACATCCTGGAAGTCCGGCGATCAGGCCCGGCTGGGGCTCGATCC
TACCGCCTCCTCCCTGCCCGTCCTTCATGAGACGCTGCGGATCCTGATGC
TATCCCTCACGGGCCTCGGCATGGACCAGATGACCAACATGGGAAAGATC
CCCAACTGCGGGACGTACATCCTGGAAGTCCGGCGATCAGGCCCGGCTGG
GGCTCGATCCTACCGCCTCCTCCCTGCCCGTCCTTCATGA
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