mRNA_Ecto-sp9_F_contig1055.508.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: 2-keto-3-deoxy-6-phosphogluconate (aldolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBG3_ECTSI) HSP 1 Score: 488 bits (1255), Expect = 4.800e-166 Identity = 259/274 (94.53%), Postives = 264/274 (96.35%), Query Frame = 2
Query: 62 MACLHFAAYAAILCISAQSFIIDPSASSSTVTHVSRCQAASLSRRETEPRSKPREDALPLPISIAVLRDVQLERAVEVVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIINAIKTSNIPVVISGGVEPDQLQAYFKSGASGFAVGRTLFEPEKSSAEIADRAQCFLLSWPQKRGRHRNVVESEDAGAS 883
MAC+HFAA AAILCISAQSFIIDPSASSSTV HVSRCQAA LS RETE RSKPREDAL LPISIAVLRDVQLERAVEVV ALYEEGFNMISVTADT++FSKILR IPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDI+NAIKTSNIPVVISGGVEPDQLQAY KSGASGFAVGRTLFEPEKSSAEIADRA+CFLLSWPQKR RHRNVVESEDAGAS
Sbjct: 1 MACVHFAACAAILCISAQSFIIDPSASSSTV-HVSRCQAARLSCRETELRSKPREDALSLPISIAVLRDVQLERAVEVVRALYEEGFNMISVTADTKNFSKILRSIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIVNAIKTSNIPVVISGGVEPDQLQAYVKSGASGFAVGRTLFEPEKSSAEIADRARCFLLSWPQKRRRHRNVVESEDAGAS 273
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGH8_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.550e-27 Identity = 72/181 (39.78%), Postives = 103/181 (56.91%), Query Frame = 2
Query: 293 VVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPDLLL--GASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDI--INAIKTSNIPVVISGGVEPDQLQAYFKSGASGFAVGRTLFEPEKSSAEIADRAQCFLLS 823
+ HAL GFN +SVTADT F++ + + +F LL GASSV++ D V A A FVSST +V LG+ S+PGV A AASA+ G LK++PA +V R I + + ++PV+ +GG+EP+ LQ+ +GASGFA+G TL+ S ++A RA F +
Sbjct: 15 IAHALAAAGFNAVSVTADTPLFARSIATLASTFGQQQLLTVGASSVSSPDAVRAAAAAGARFVSSTEARAEVVAAAAALGITSLPGVRGAADAASALDMGATALKLFPAASVGAGALRGIRGLGGVM-EHVPVIAAGGLEPESLQSLIDAGASGFAIGSTLYRGGDSPRDVARRAALFAAA 194
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: 2-dehydro-3-deoxy-6-phosphogalactonate (aldolase n=3 Tax=Shewanella TaxID=22 RepID=UPI001E4097A3) HSP 1 Score: 118 bits (296), Expect = 9.940e-27 Identity = 61/181 (33.70%), Postives = 104/181 (57.46%), Query Frame = 2
Query: 251 IAVLRDVQLERAVEVVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIINAIKTSNIPVVISGGVEPDQLQAYFKSGASGFAVGRTLFEPEKSSAEI 793
IA+LR V E VEV AL EEGF MI V ++ + + +R I ++ L+GA +V T+++ + A + S + +PA++KRT++L M+S PGV+TP + +A++AG K +PA + P+ + ++ P++ GG+ + Y +GA GF +G L++P K+ AE+
Sbjct: 13 IAILRGVTNEEVVEVTGALIEEGFTMIEVPLNSPNAVESIRRIVEAYGDKALIGAGTVLTVEQAEAVAAVGGKLIVSPNMNPAVIKRTKELDMISAPGVATPTELFAAIEAGADAAKAFPADAIPPSTIK-AWTSVAPKGYPILAVGGIHAGNMADYLSAGAVGFGIGSNLYKPGKTVAEV 192
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: 2-dehydro-3-deoxy-6-phosphogalactonate (aldolase n=6 Tax=Buttiauxella TaxID=82976 RepID=A0A3G2II51_9ENTR) HSP 1 Score: 118 bits (296), Expect = 1.260e-26 Identity = 67/204 (32.84%), Postives = 118/204 (57.84%), Query Frame = 2
Query: 236 PLPISIAVLRDVQLERAVEVVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIINAIKTSNIPVVISGGVEPD--QLQAYFKSGASGFAVGRTLFEPEKSSAEIADRAQCFLLSWPQKRG 841
PLP+ +A+LR + E AVE L E GF+ + V ++ S + + + +GA +V T+++VD C + S SC P +++RTR L ++S+PG+ TP++A A+ AG LK++PA +VSP + A+ ++ ++ GG++PD Q+++Y ++GA+GF +G L++ S + +RAQ + +W Q G
Sbjct: 14 PLPL-VAILRGITPEDAVEAAEILLECGFHYLEVPLNSPSPLESIALMRSVVGERGYVGAGTVLTVEQVDAVAECGGQLIISPSCCPEVIRRTRLLKLISMPGIMTPSEAFIAIDAGASALKLFPAEHVSPVVTK-AFRAVVPRSVAMLPVGGIQPDAAQMRSYIQAGANGFGLGGGLYQAGLSMPTLRERAQAYQHAWRQCAG 215
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: 2-dehydro-3-deoxy-6-phosphogalactonate (aldolase n=2 Tax=Curvibacter TaxID=281915 RepID=C9YF53_CURXX) HSP 1 Score: 118 bits (295), Expect = 2.340e-26 Identity = 59/194 (30.41%), Postives = 111/194 (57.22%), Query Frame = 2
Query: 251 IAVLRDVQLERAVEVVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIINAIKTSNI--PVVISGGVEPDQLQAYFKSGASGFAVGRTLFEPEKSSAEIADRAQCFLLSW 826
IA+LR ++ E A+++ ALYE GF + V + + + + D L+G ++ T+ V+ A + S +C+PA+++R +LGM++ PGV+TP +A +A+ AG LK++PA ++ + + + + T PV GG+ P+ + + K+GA+GF +G L+ P ++A++ DRA ++ +W
Sbjct: 32 IAILRGLKPEEALDIGQALYEAGFRTLEVPLNRPGAIECIAALAGGLGADALIGGGTMLTVAHVEAVHAAGGRLMVSPNCEPAVIRRAVELGMLAAPGVATPTEAFAALAAGAHALKLFPAESLGHGGLKALKSVVPTGTDLWPV---GGITPESIGPWVKAGATGFGIGSQLYAPGVTAAQVQDRASAYVQAW 222
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: 2-dehydro-3-deoxy-6-phosphogalactonate (aldolase n=1 Tax=Alsobacter soli TaxID=2109933 RepID=A0A2T1HPJ1_9HYPH) HSP 1 Score: 117 bits (292), Expect = 4.330e-26 Identity = 61/196 (31.12%), Postives = 113/196 (57.65%), Query Frame = 2
Query: 251 IAVLRDVQLERAVEVVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIINAIKTSNIPVVISGGVEPDQLQAYFKSGASGFAVGRTLFEPEKSSAEIADRAQCFLLSWPQKR 838
IA+LR ++ + V V AL GF ++ V ++ + + ++ ++GA +V D+V+ A + S +C+P +++RT+ LG+VS PGV TP++A A +AG +LK +P + P + ++A+ +V+ GG+ P+ L+AY ++ SGF +G L++P ++AE+ +RA+ FL ++ Q R
Sbjct: 17 IAILRGLKPDEGVAVGEALVSAGFTILEVPLNSPEPLDSIGRLAKALAGRAVVGAGTVYRPDQVEAVAAVGGQIIVSPNCNPEVIRRTKQLGLVSAPGVMTPSEAYQACEAGADVLKFFPGEVIGPAGVK-AMSAVLPKGPALVMVGGITPETLKAYAETPVSGFGLGSALYKPGSTAAEVGERARAFLAAFAQFR 211
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: 2-dehydro-3-deoxy-6-phosphogalactonate (aldolase n=1 Tax=Citrobacter sp. NCU1 TaxID=2026683 RepID=UPI0013920F4A) HSP 1 Score: 117 bits (292), Expect = 4.330e-26 Identity = 70/203 (34.48%), Postives = 120/203 (59.11%), Query Frame = 2
Query: 236 PLPISIAVLRDVQLERAVEVVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPD-LLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIINAIKTSNIPVVIS---GGVEPD--QLQAYFKSGASGFAVGRTLFEPEKSSAEIADRAQCFLLSW 826
PLP+ +A+LR ++ E+A E L GF + V ++ S + +R + R + D +GA +V T +VD AC + S +C+P +++RTR LG+VS+PGV TP++A +A+ AG LK++PA ++P +++ A +T P V GG+ PD Q++ Y ++GA+GF +G +++ S+ E+A RA + +W
Sbjct: 14 PLPL-VAILRGIKPEQAREAAEMLLANGFRWLEVPLNSPSPYESIRLM-RDYVGDRAFVGAGTVVTPAQVDEVAACGGQLIVSPNCNPDVIRRTRQLGLVSLPGVMTPSEAFTALDAGASALKLFPAEFLTP----ELMKAFRTVLPPDVACLPVGGIRPDSQQMRRYIQNGANGFGLGSGIYQAGMSTDELAIRASAWRNAW 210
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: 2-dehydro-3-deoxy-6-phosphogalactonate (aldolase n=1 Tax=Rhodospirillales bacterium 20-64-7 TaxID=1970566 RepID=A0A257PZ44_9PROT) HSP 1 Score: 116 bits (290), Expect = 6.340e-26 Identity = 64/202 (31.68%), Postives = 114/202 (56.44%), Query Frame = 2
Query: 227 DALPLPISIAVLRDVQLERAVEVVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIINAIK--TSNIPVVISGGVEPDQLQAYFKSGASGFAVGRTLFEPEKSSAEIADRAQCFLLSW 826
D LPL IA+LR V+ E V + AL E GF ++ V ++ S + +R + + PD+L+GA +VTT D+V + DP +++ + G+V PG++TP + +A+ AG LK++PA ++P + + + T +PV GG+ PD ++ + K+GA+GF +G L++P ++A++ A+ F+ +W
Sbjct: 7 DRLPL---IAILRGVRAEEVVPIGRALREAGFAIVEVPLNSPSPCESIRRLCQDLGPDMLIGAGTVTTPDQVAAVAEAGGRIIVMPHGDPVVIRAAKAAGLVCTPGIATPTEGFAALAAGADALKLFPAEMLTPPVLKAMRSVFPAGTRFLPV---GGITPDTMEPFVKAGAAGFGLGSALYKPGMAAADVGVHARAFVEAW 202
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: 2-dehydro-3-deoxy-6-phosphogalactonate (aldolase n=3 Tax=Desulfofustis sp. PB-SRB1 TaxID=1385624 RepID=A0A8I1LF90_9DELT) HSP 1 Score: 115 bits (288), Expect = 1.270e-25 Identity = 64/197 (32.49%), Postives = 106/197 (53.81%), Query Frame = 2
Query: 251 IAVLRDVQLERAVEVVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIINAIKTSNIPVVISGGVEPDQLQAYFKSGASGFAVGRTLFEPEKSSAEIADRAQCFLLSWPQKRG 841
IA+ R V+ A V A+ GF +I ++ + + + R L+GA +VTT+D+ + + S CDPAI++ T++ G++SIPGV+TP +A +A+ AG LK++PA ++ Q + +++ GG+ P+ Q Y + GASGFAVG +L+ P +S +I RA F+ +W G
Sbjct: 14 IAITRGVEPHEAEAVGAAICSGGFRVIENPLNSPDPCRSIEIMGRVLASRALIGAGTVTTVDQGGHGQKAGGSLIISPHCDPAIIRATKEAGLISIPGVATPTEAMTALAAGADALKLFPAEIITA-QAVGAFRVVLPPETVLLVVGGITPNNWQPYLQKGASGFAVGSSLYAPGRSIGDITARAAAFVRAWQVHTG 209
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Match: 2-dehydro-3-deoxy-6-phosphogalactonate (aldolase n=1 Tax=Citrobacter amalonaticus TaxID=35703 RepID=UPI001A238C55) HSP 1 Score: 115 bits (288), Expect = 1.450e-25 Identity = 67/201 (33.33%), Postives = 110/201 (54.73%), Query Frame = 2
Query: 236 PLPISIAVLRDVQLERAVEVVHALYEEGFNMISVTADTRSFSKILRCIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIINAIKTSNIPVVISGGVEPD--QLQAYFKSGASGFAVGRTLFEPEKSSAEIADRAQCFLLSWPQ 832
PLP+ IA+LR + + AV L E GF + V ++ S + +R + + + +GA +V T +VD + S + D A+++RTR MVS+PGV TP +A +A+ AG LK++PA +SP + + A+ N+ + GG+ PD Q+Q Y ++GA+GF +G L++ E+A RA + +W Q
Sbjct: 14 PLPL-IAILRGITPKDAVSAAEILIEAGFRWLEVPLNSPSALESIRLMRQCAGNNAKIGAGTVLTATQVDEVAEAGGQLIISPNTDAAVIQRTRQRNMVSLPGVMTPTEAFAALDAGASALKLFPAEQLSPELLK-ALRAVLPRNLACLPVGGIRPDTDQMQRYVQAGANGFGLGGALYQAGMPLDELAKRADAYRQAWEQ 212 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1055.508.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1055.508.1 >prot_Ecto-sp9_F_contig1055.508.1 ID=prot_Ecto-sp9_F_contig1055.508.1|Name=mRNA_Ecto-sp9_F_contig1055.508.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=275bp MACLHFAAYAAILCISAQSFIIDPSASSSTVTHVSRCQAASLSRRETEPRback to top mRNA from alignment at Ecto-sp9_F_contig1055:12718..15290+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1055.508.1 ID=mRNA_Ecto-sp9_F_contig1055.508.1|Name=mRNA_Ecto-sp9_F_contig1055.508.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2573bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1055:12718..15290+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1055:12718..15290+ >mRNA_Ecto-sp9_F_contig1055.508.1 ID=mRNA_Ecto-sp9_F_contig1055.508.1|Name=mRNA_Ecto-sp9_F_contig1055.508.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1650bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1055:12718..15290+ (Ectocarpus species9 EcSCA_722f female)back to top |