prot_Ecto-sp9_F_contig999.18051.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig999.18051.1
Unique Nameprot_Ecto-sp9_F_contig999.18051.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length90
Homology
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BLAST of mRNA_Ecto-sp9_F_contig999.18051.1 vs.
Match: TOP1Ac (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G724_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.510e-12
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0 
Query:   38 PSSISRESKTTNGDAKAVKVKGSQEAHEAIRPDLQVVGAVPAATDTPDEKQAG 90
            P+    + + + GDAKAVKVKGSQEAHEAIRP LQVVGAVPAATDTPD   AG
Sbjct:   99 PAGSGSDHEGSAGDAKAVKVKGSQEAHEAIRPALQVVGAVPAATDTPDGNPAG 151
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BLAST of mRNA_Ecto-sp9_F_contig999.18051.1 vs.
Match: TOP1Ac (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.110e-8
Identity = 34/41 (82.93%), Postives = 34/41 (82.93%), Query Frame = 0 
Query:   50 GDAKAVKVKGSQEAHEAIRPDLQVVGAVPAATDTPDEKQAG 90
            GDAK VKVKGSQEAHEAIRP L  VGA PAATDT D KQAG
Sbjct:  158 GDAKVVKVKGSQEAHEAIRPAL--VGATPAATDTHDGKQAG 196
[Close]
BLAST of mRNA_Ecto-sp9_F_contig999.18051.1 vs.
Match: DNA (topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-7
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 0 
Query:   50 GDAKAVKVKGSQEAHEAIRPDLQVVGAVPAATDTPDEKQA 89
            GDAK VKVKGSQEAHEAIRP L  VGA PAATDT D KQA
Sbjct:  457 GDAKTVKVKGSQEAHEAIRPAL--VGATPAATDTADGKQA 494
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig999.18051.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
TOP1Ac1.510e-1271.70domain-containing protein n=1 Tax=Ectocarpus silic... [more]
TOP1Ac2.110e-882.93domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
DNA1.020e-782.50topoisomerase (Fragment) n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig999contigEcto-sp9_F_contig999:1256..3203 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig999.18051.1mRNA_Ecto-sp9_F_contig999.18051.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig999 1233..3203 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig999.18051.1 ID=prot_Ecto-sp9_F_contig999.18051.1|Name=mRNA_Ecto-sp9_F_contig999.18051.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=90bp
MRWPAALPTSSNDPPVATYRGDCKSPCCYTVRLRLSTPSSISRESKTTNG
DAKAVKVKGSQEAHEAIRPDLQVVGAVPAATDTPDEKQAG
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