prot_Ecto-sp9_F_contig9978.18040.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9978.18040.1
Unique Nameprot_Ecto-sp9_F_contig9978.18040.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length300
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9978.18040.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL38_ECTSI)

HSP 1 Score: 452 bits (1163), Expect = 1.600e-158
Identity = 231/243 (95.06%), Postives = 236/243 (97.12%), Query Frame = 0 
Query:    5 MRTRLVAGLLLVAYLELFTTPVMAEKTRSTPFKLGNMSANAVARTPTVTSLVEALVTNAQISTKRVASVLKEIEPPNPEASLLLDLLAAGESSCPQKDNITREFGTGNSAGKDTTSTLESHSLGSCSDVYELCFESCSVEKGLFKKKNKPAELSCHVVCAVAQEGCQSCSKKHYKRSMVATLQGLVRVVSTVVYWMCYLLAMTTCCVGTIAWLVVGLFYWEPTMPLFSWAESWLPPAIAVVIF 247
            MRTRLVAGLLLVAYLELFTTPVMAEKTRSTPFKLGNMSANAVARTPTVTSLVEALVTNAQISTKRVASVLKEIEPPNPEASLLLDLLAAGESSCPQKDNITR+FGT NSAGKDTTSTLESHSLGSCSDVYELCFESCSV KGLFKKKN PAE SCHVVCAVAQEGCQSCSKKHYKRSM+ATLQGLVRVVSTVVYWMCYLLA+ TCCVGTIAWLVVGLFYWEPT+PLFSWAESWLPPAI VV +
Sbjct:    1 MRTRLVAGLLLVAYLELFTTPVMAEKTRSTPFKLGNMSANAVARTPTVTSLVEALVTNAQISTKRVASVLKEIEPPNPEASLLLDLLAAGESSCPQKDNITRDFGTENSAGKDTTSTLESHSLGSCSDVYELCFESCSVGKGLFKKKNTPAEGSCHVVCAVAQEGCQSCSKKHYKRSMIATLQGLVRVVSTVVYWMCYLLAVITCCVGTIAWLVVGLFYWEPTVPLFSWAESWLPPAIVVVSY 243
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9978.18040.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ8_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 6.430e-86
Identity = 128/143 (89.51%), Postives = 133/143 (93.01%), Query Frame = 0 
Query:  102 DNITREFGTGNSAGKDTTSTLESHSLGSCSDVYELCFESCSVEKGLFKKKNKPAELSCHVVCAVAQEGCQSCSKKHYKRSMVATLQGLVRVVSTVVYWMCYLLAMTTCCVGTIAWLVVGLFYWEPTMPLFSWAESWLPPAIAV 244
            DNITR+FGTGN+AGK TTSTLESHSLGSCSDVYELCFESCSV KGLFKKKNKPAE SCHVVCAVAQEGCQSCSKKHYK SM+ TLQG+VRVVSTV YWMCYLLA+  CC GTIAWLVVGLFYWEPTMPLFSWAESWLPPAI V
Sbjct:    7 DNITRDFGTGNTAGKGTTSTLESHSLGSCSDVYELCFESCSVGKGLFKKKNKPAEGSCHVVCAVAQEGCQSCSKKHYKGSMITTLQGMVRVVSTVAYWMCYLLAVIACCFGTIAWLVVGLFYWEPTMPLFSWAESWLPPAILV 149
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9978.18040.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW32_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.800e-31
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 0 
Query:    1 MRFPMRTRLVAGLLLVAYLELFTTPVMAEKTRSTPFKLGNMSANAVARTPTVTSLVEALVTNAQISTKRVASV 73
            MRFPMRTRLVAGLLLVAYL LF TP M E+TRSTPFKLGNMSANAVARTPTV SLVEAL TNAQISTKRVASV
Sbjct:    1 MRFPMRTRLVAGLLLVAYLGLFPTPAMGERTRSTPFKLGNMSANAVARTPTVISLVEALATNAQISTKRVASV 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9978.18040.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.600e-15895.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.430e-8689.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.800e-3190.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..195
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 274..293
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 225..235
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 236..262
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 263..273
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 294..299
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 196..224
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.834
NoneNo IPR availableTMHMMTMhelixcoord: 201..223
NoneNo IPR availableTMHMMTMhelixcoord: 243..265

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9978contigEcto-sp9_F_contig9978:1970..4560 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9978.18040.1mRNA_Ecto-sp9_F_contig9978.18040.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9978 1970..4560 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9978.18040.1 ID=prot_Ecto-sp9_F_contig9978.18040.1|Name=mRNA_Ecto-sp9_F_contig9978.18040.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=300bp
MRFPMRTRLVAGLLLVAYLELFTTPVMAEKTRSTPFKLGNMSANAVARTP
TVTSLVEALVTNAQISTKRVASVLKEIEPPNPEASLLLDLLAAGESSCPQ
KDNITREFGTGNSAGKDTTSTLESHSLGSCSDVYELCFESCSVEKGLFKK
KNKPAELSCHVVCAVAQEGCQSCSKKHYKRSMVATLQGLVRVVSTVVYWM
CYLLAMTTCCVGTIAWLVVGLFYWEPTMPLFSWAESWLPPAIAVVIFNPF
AVMGVIAWSIHLAWLDPSVVLLKLWQFISNQAPFSAVLVGWVMHVRRCQ*
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