prot_Ecto-sp9_F_contig996.18026.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig996.18026.1
Unique Name	prot_Ecto-sp9_F_contig996.18026.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	1228

Homology

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BLAST of mRNA_Ecto-sp9_F_contig996.18026.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS2_ECTSI)

HSP 1 Score: 1078 bits (2789), Expect = 0.000e+0
Identity = 680/737 (92.27%), Postives = 686/737 (93.08%), Query Frame = 0

Query:  492 MKTVLPDFQGTRYARSRLKQTLAHEWARQEYRTGIALGQVDRGMTEMEFVRRRVEGGSLYALLEQESRDYLRVGPFTDADVELLGMSFAQAQASKDLPPPAAAPKPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAAAAKAVAAAEGGVASWADRLRDFQIDIPASATYDGLASDSSRGG-AADGTGGQVGAEAAQKGGSQQEGDASAWDGIGVDAATVIRHRRQFDLRCRAYEALNTASRNDKTNGLLEKTHRLRQDHAAIIAAKRVTLEGTLQNVRQQLNGREDQLRHVHMEQRGVNPLDTTVVAGLNESEAAIMTRVAEKKVQMAMIIDEANKVVQWEQTAELARREAMHHAADMHGHGGGFAPGSAKERNELVQSMMSQKVNIMLLSTFCKLRGPWLAPSGYVRGNRSVSDGAAGSAVAAAEEKGAEPDPRTAVVSSPSLSVNTAENTAXXXXXXXXXXXXXXXXXXDXSGXXXVGEPKSNSSSPTSAAGGIDGAGSXXXXXXXXXVEAKPGKRQIKLRLLLPSEAGPKKEKGDGDPGQDAHRQQPGQQAEGGGDAGAACTGPSYTVAAEGTASRAGDSSGDGSSSMAAVMARGGKEAAMASLAGARGTGSVREQDGVDAGSKGGDGPAPVDATASTGRGNEGGDREQEDDPGPEAGDASSLARRGSPSPAXXXXXXXXXXXXXHSPQHSPPPADAGSLRLSEGGGGVGEDVSKGSNGMDVDTV 1227
            MKTVLP+FQGTRYARSRLKQTLAHEWARQEYRTGIALGQVDRGMTEMEFVRRRVEGGSLYALLEQESRDYLRVGPFTDADVELLGMSFAQAQASK+LPPPAAAPKPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KDAAAAKA AAAEGGVASWADRLRDFQIDIPASATYDGLASDSSRGG AAD T GQV AEAAQKGGSQQE DASAWDGIGVDAATVIRHRRQFDLRCRAYEALNTASRNDKTNGLLEKTHRLRQDHAAI+AAKRVTLEGTLQNVRQQLNGREDQLRHVHMEQRGVNPLDTTVVAGLNESEAAIMTRVAEKKVQMAMIIDEANKVVQWEQTAELARREAMHHAADMHGHGGGFAPGSAKERNELVQSMMSQKVNIMLLSTFCKLRGPWLAPSGYVRG RSVSDGAAGSAVAAAEEKGAEPDPRTAVVSSPSLSV+TAENTAXXXXXXXXXXXXXXXXXX X  XXX                G DGAGS     XX  VEAKPGKRQIKLRLL PSEA PKKEKGDGDPGQDAHRQQPGQQAEGGGDAGAACTGPSYTVAAEGTASRAGDSSGDG SSMAAVMA GGKEAAMASLAGARGTGSVREQDGVDAGSKGGDGPAP+DATAST  GNEGGDR+QEDDP PEA DASSLARRGSP   XXXXXXXXXXXX HSPQHS PPADAGSLRLSEGGGGVGEDVS GSNGMDVDTV
Sbjct:    1 MKTVLPEFQGTRYARSRLKQTLAHEWARQEYRTGIALGQVDRGMTEMEFVRRRVEGGSLYALLEQESRDYLRVGPFTDADVELLGMSFAQAQASKELPPPAAAPKPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGKDAAAAKAGAAAEGGVASWADRLRDFQIDIPASATYDGLASDSSRGGGAADRTDGQVVAEAAQKGGSQQEDDASAWDGIGVDAATVIRHRRQFDLRCRAYEALNTASRNDKTNGLLEKTHRLRQDHAAIVAAKRVTLEGTLQNVRQQLNGREDQLRHVHMEQRGVNPLDTTVVAGLNESEAAIMTRVAEKKVQMAMIIDEANKVVQWEQTAELARREAMHHAADMHGHGGGFAPGSAKERNELVQSMMSQKVNIMLLSTFCKLRGPWLAPSGYVRGKRSVSDGAAGSAVAAAEEKGAEPDPRTAVVSSPSLSVSTAENTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDGAGSGPAAGXXAGVEAKPGKRQIKLRLLPPSEAEPKKEKGDGDPGQDAHRQQPGQQAEGGGDAGAACTGPSYTVAAEGTASRAGDSSGDGFSSMAAVMAMGGKEAAMASLAGARGTGSVREQDGVDAGSKGGDGPAPMDATASTASGNEGGDRDQEDDPKPEARDASSLARRGSPXXXXXXXXXXXXXXXSHSPQHSTPPADAGSLRLSEGGGGVGEDVSNGSNGMDVDTV 737

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BLAST of mRNA_Ecto-sp9_F_contig996.18026.1 vs.
Match: PDZ (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS1_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 5.190e-58
Identity = 127/190 (66.84%), Postives = 129/190 (67.89%), Query Frame = 0

Query:   42 MVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIVGLIRKATFPLTLVWSRQRKAGLAQATLPGTAIRQQHPPTSRDGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDAAATADWEQATSKGRAASRASREAEGEEREGAGRRNPRVSSTDASEDVAAAGQQQQT 231
            MVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIVGLIRKATFPLTLVWSRQRKAG+A                                                             ATSKGRAASRASREAEGEEREGAGRRNPRVSSTDASEDVAAAGQQQQ+
Sbjct:    1 MVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIVGLIRKATFPLTLVWSRQRKAGIA-------------------------------------------------------------ATSKGRAASRASREAEGEEREGAGRRNPRVSSTDASEDVAAAGQQQQS 129

[Close]

BLAST of mRNA_Ecto-sp9_F_contig996.18026.1 vs.
Match: PDZ (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV99_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 7.680e-52
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0

Query:    1 MDTAGAVEDPAKRSSGQQPQQQQWDRFEVVLSKPSGSQKLGMVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI 98
            MDTAGAVEDPA+RSSGQQPQQQQWDRFEVVLSKPSGSQKLGMVLKHAQV GEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI
Sbjct:    1 MDTAGAVEDPAQRSSGQQPQQQQWDRFEVVLSKPSGSQKLGMVLKHAQVCGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI 98

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig996.18026.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig996.18026.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
Uncharacterized	0.000e+0	92.27	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS2...	[more]
PDZ	5.190e-58	66.84	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
PDZ	7.680e-52	97.96	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.42.10		coord: 13..125 e-value: 1.4E-8 score: 36.6
IPR001478	PDZ domain	PROSITE	PS50106	PDZ	coord: 28..117 score: 11.642
IPR036034	PDZ superfamily	SUPERFAMILY	50156	PDZ domain-like	coord: 22..118

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig996	contig	Ecto-sp9_F_contig996:18261..26897 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig996.18026.1	mRNA_Ecto-sp9_F_contig996.18026.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig996 18261..26902 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig996.18026.1 ID=prot_Ecto-sp9_F_contig996.18026.1|Name=mRNA_Ecto-sp9_F_contig996.18026.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1228bp
MDTAGAVEDPAKRSSGQQPQQQQWDRFEVVLSKPSGSQKLGMVLKHAQVF
GEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIVG
LIRKATFPLTLVWSRQRKAGLAQATLPGTAIRQQHPPTSRDGTPPPLPPS
AAASTSAPFSSDKTAVATTNNNPDAAATADWEQATSKGRAASRASREAEG
EEREGAGRRNPRVSSTDASEDVAAAGQQQQTQRAPIGEPIQDRQQQQQRS
SSGGNRARNATAEAAAYVPPLEGAVPMAPKPSPPPPTTATIAPAGNGSRR
SPASAGRKSREATMSLQQQRELPRETNGNGEDSGNASGNGGCGGSSISTD
APLTAQRRRDRDKVRRDKVREDAGPGGGVGVDNDGGAGCGANSGGSGNSS
RNSSSSSSSHQPQATPAASKRGRSGRGAGRGGGRGGRRGGGRGSKGKGAE
AARAAASATGTAEATAAAVAAAAAGDAGRDDVAAPEWLNPLMKTVLPDFQ
GTRYARSRLKQTLAHEWARQEYRTGIALGQVDRGMTEMEFVRRRVEGGSL
YALLEQESRDYLRVGPFTDADVELLGMSFAQAQASKDLPPPAAAPKPDAA
AAESGPKSAKSGQEKATKTGQEKGAKTGKQSSGKDAAAAKAVAAAEGGVA
SWADRLRDFQIDIPASATYDGLASDSSRGGAADGTGGQVGAEAAQKGGSQ
QEGDASAWDGIGVDAATVIRHRRQFDLRCRAYEALNTASRNDKTNGLLEK
THRLRQDHAAIIAAKRVTLEGTLQNVRQQLNGREDQLRHVHMEQRGVNPL
DTTVVAGLNESEAAIMTRVAEKKVQMAMIIDEANKVVQWEQTAELARREA
MHHAADMHGHGGGFAPGSAKERNELVQSMMSQKVNIMLLSTFCKLRGPWL
APSGYVRGNRSVSDGAAGSAVAAAEEKGAEPDPRTAVVSSPSLSVNTAEN
TAAAAAADEKQGDRPPSGGKDDSGSGGVGEPKSNSSSPTSAAGGIDGAGS
GAAAGAGAGVEAKPGKRQIKLRLLLPSEAGPKKEKGDGDPGQDAHRQQPG
QQAEGGGDAGAACTGPSYTVAAEGTASRAGDSSGDGSSSMAAVMARGGKE
AAMASLAGARGTGSVREQDGVDAGSKGGDGPAPVDATASTGRGNEGGDRE
QEDDPGPEAGDASSLARRGSPSPAEGDMDKEGAGAASHSPQHSPPPADAG
SLRLSEGGGGVGEDVSKGSNGMDVDTV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001478	PDZ
IPR036034	PDZ_sf