prot_Ecto-sp9_F_contig995.18016.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig995.18016.1
Unique Nameprot_Ecto-sp9_F_contig995.18016.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length737
Homology
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BLAST of mRNA_Ecto-sp9_F_contig995.18016.1 vs.
Match: PPR_long (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX5_9PHAE)

HSP 1 Score: 515 bits (1327), Expect = 9.330e-169
Identity = 418/599 (69.78%), Postives = 424/599 (70.78%), Query Frame = 0 
Query:    1 MPSPTGMSFVSPPNTGAQLGAVLHVGAVPPPRGGQAFMCSTTATTATRSNDEAVREAATKRDDAASPGLTPAAAPLAGGRMAGLSRARKAAAAARDVGAMTDGPGNNGSVLEQQVVPAATTR--RVRQRPRSDDQAAPSTAAAREARGSPAEQRFYGSPEEVEASADKEGVSVRALRSRSRALVNRIKRIPKTESSWEAALRELDRAEREEARHRXXXXXXXXXXXDAGQDGEPLDLM--------------------------------WREALGLLYHIRALGITPNVKSVSATLNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLREMEERGIEATASNYKHALYAC--------------------------------------------------CDSKTGENWEAAAALLRRSETLRNNFYYGRVIMACRRAGQWQKALEVLREMSRVGLTPDIFCYDTVISVACLSSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITVCATCGEVDRAVGLFD 515
            M SPTGM FVSPPNTGAQLGAVLHVGAVPPPRGGQ FMCSTTATTATRSNDEAVREAAT  DDAA P LTPAAAPLAGGRMAGLSRAR+AAAAARDVGAMTDGPGNNGS+LE            RVRQRPRSDDQAAPSTAAAR ARGSPAEQ  YGS EEVEASA KEGVS RALR RSRALV RIKRIPKTESSWEAALRELD+AEREEARHRXXXXXXXXXXXDAGQDGEPLDL+                                WREALGLLYHIRALGITPNVKSVSATLNACGQAGQ                                                                                                    CDSKTGENWEAAAALLRRS+TLRNNF+YGRVIMACRRAGQWQKALEVLREM RVGLTPDIFCYDTVISVACLSSVGA XXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              VITVCATCGEVDRAVGLFD
Sbjct:    1 MRSPTGMWFVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSNDEAVREAATTGDDAAIPELTPAAAPLAGGRMAGLSRAREAAAAARDVGAMTDGPGNNGSLLEXXXXXXXXXXXXRVRQRPRSDDQAAPSTAAAR-ARGSPAEQLLYGSTEEVEASAKKEGVSARALR-RSRALVRRIKRIPKTESSWEAALRELDQAEREEARHRXXXXXXXXXXXDAGQDGEPLDLINSSSSSTGKVVRVGMVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSATLNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSDTLRNNFFYGRVIMACRRAGQWQKALEVLREMPRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSGVEPNTYSYGSVITVCATCGEVDRAVGLFD 597
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BLAST of mRNA_Ecto-sp9_F_contig995.18016.1 vs.
Match: PPR_long (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N2_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 2.000e-56
Identity = 201/331 (60.73%), Postives = 204/331 (61.63%), Query Frame = 0 
Query:  235 LMWREALGLLYHIRALGITPNVKSVSATLNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLREMEERGIEATASNYKHALYAC--------------------------------------------------CDSKTGENWEAAAALLRRSETLRNNFYYGRVIMACRRAGQWQKALEVLREMSRVGLTPDIFCYDTVISVACLSSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITVCATCGEVDRAVGLFD 515
            L WREALGLLYHIRALGITPNVKSVSA LNACGQAGQ                                                                                                    CDSKTGENWEAAAALLRRSETLRNNF+YGRVIMACRRAGQWQKALEVLREMSRVGL PDIFCYDTVISVAC+SSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXX SACKKAGRPRQAVSL       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                VITVCATCGEVD+AVGLFD
Sbjct:   17 LRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSETLRNNFFYGRVIMACRRAGQWQKALEVLREMSRVGLAPDIFCYDTVISVACMSSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSACKKAGRPRQAVSLLRAMRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFD 347
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BLAST of mRNA_Ecto-sp9_F_contig995.18016.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812RT14_9DINO)

HSP 1 Score: 59.7 bits (143), Expect = 1.160e-5
Identity = 41/157 (26.11%), Postives = 64/157 (40.76%), Query Frame = 0 
Query:  237 WREALGLLYHIRALGITPNVKSVSATLNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLREMEERGIEATASNYKHALYACCDSKTGENWEAAAAL----LRRSETLRNNFYYGRVIMACRRAGQWQKALEVLREMSRVGLTPDIFCYDTVIS 389
            W+ ALG    +    + PNV + S+ L AC +  QW   +ELLG+ R WG EL+  +                       ++   C +     WE A  L    L  +   RN   Y  ++ +C    +W ++L +LR +      PD     +VIS
Sbjct:   90 WQTALGFTSQLSEQEVLPNVVTSSSALCACREGHQWLLAVELLGDLRLWGIELDVVAHG---------------------SVVGACKAA----WEQAFFLHHEPLGDARLTRNIISYSALLQSCSECSEWSQSLHILRSLKTTASRPDTVALTSVIS 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig995.18016.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
PPR_long9.330e-16969.78domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PPR_long2.000e-5660.73domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical1.160e-526.11protein n=1 Tax=Symbiodinium necroappetens TaxID=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 195..222
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 192..508
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 487..623
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 559..730
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 559..730
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 415..548
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 487..623
coord: 415..548
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 192..508
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 560..607
e-value: 3.0E-8
score: 33.7
coord: 420..466
e-value: 6.0E-10
score: 39.2
coord: 489..536
e-value: 2.5E-9
score: 37.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 455..482
e-value: 8.1E-5
score: 20.6
coord: 635..668
e-value: 1.4E-4
score: 19.8
coord: 351..381
e-value: 2.4E-5
score: 22.2
coord: 599..633
e-value: 1.4E-4
score: 19.8
coord: 492..526
e-value: 1.6E-5
score: 22.7
coord: 670..701
e-value: 2.4E-4
score: 19.0
coord: 527..560
e-value: 6.9E-5
score: 20.8
coord: 420..453
e-value: 9.2E-8
score: 29.8
coord: 562..597
e-value: 3.8E-5
score: 21.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 263..286
e-value: 0.52
score: 10.7
coord: 349..376
e-value: 0.0011
score: 19.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 345..379
score: 10.885
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 560..595
score: 9.723
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 490..524
score: 10.939
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 632..666
score: 10.183
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 596..626
score: 8.901
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 418..452
score: 12.101
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 453..487
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 255..289
score: 8.024
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 667..701
score: 11.181
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 380..417
score: 6.171
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 525..559
score: 10.611
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 626..735
e-value: 3.1E-24
score: 88.1
coord: 503..625
e-value: 1.6E-37
score: 131.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 395..502
e-value: 5.0E-25
score: 89.9
coord: 292..394
e-value: 1.4E-15
score: 59.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 184..291
e-value: 1.5E-8
score: 36.4
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 615..718
e-value: 1.5E-6
score: 27.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig995contigEcto-sp9_F_contig995:18773..27128 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig995.18016.1mRNA_Ecto-sp9_F_contig995.18016.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig995 18773..27128 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig995.18016.1 ID=prot_Ecto-sp9_F_contig995.18016.1|Name=mRNA_Ecto-sp9_F_contig995.18016.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=737bp
MPSPTGMSFVSPPNTGAQLGAVLHVGAVPPPRGGQAFMCSTTATTATRSN
DEAVREAATKRDDAASPGLTPAAAPLAGGRMAGLSRARKAAAAARDVGAM
TDGPGNNGSVLEQQVVPAATTRRVRQRPRSDDQAAPSTAAAREARGSPAE
QRFYGSPEEVEASADKEGVSVRALRSRSRALVNRIKRIPKTESSWEAALR
ELDRAEREEARHRRREQDQQNNNDDAGQDGEPLDLMWREALGLLYHIRAL
GITPNVKSVSATLNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLR
EMEERGIEATASNYKHALYACCDSKTGENWEAAAALLRRSETLRNNFYYG
RVIMACRRAGQWQKALEVLREMSRVGLTPDIFCYDTVISVACLSSVGAQW
KIARGLLREQANTGVPCSLISYNLVLSACKKAGRPRQAVSLLRAMRRHGC
SPDLISYNTAISACVKRREWELAMFVLRDMQRPDSGLEPNTYSYGSVITV
CATCGEVDRAVGLFDEMPEAGVKVDAFTYNSVAMAYARNGRWRQAIATLS
DMSELGYVGDVVSYTAAIRACGWAGECDRALSLLREMREEKGVKPNEKTF
AAAISACGHGGRWERGLELLSEMPRSTNFLPDADCYTSAIKACGKGGQWE
QAFTLLREAAAEGTTPDAKTYEATIIACGTAGEWEKAVDLVHEMEGKGVP
PHEICYIAAIRACEKAEEFQAAEALREEVEGLPRSQR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long