prot_Ecto-sp9_F_contig9941.18008.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9941.18008.1
Unique Nameprot_Ecto-sp9_F_contig9941.18008.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length710
Homology
BLAST of mRNA_Ecto-sp9_F_contig9941.18008.1 vs.
Match: Sel1 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G201_ECTSI)

HSP 1 Score: 1164 bits (3011), Expect = 0.000e+0
Identity = 643/679 (94.70%), Postives = 649/679 (95.58%), Query Frame = 0
Query:    1 MPRSTPELRLEAPLDDGLDSSKGSDNGLIVDTDEESETPPPYNEGIIQRPSARLVSRRTDDXXXXXTSSAKTTPSPAGSRLLSATSAALTRVKGMTLRSGTSGRVLNPRSVTLVSGLLSPSRGKRGVDNDGADRTSEEDRSRRDRPFSQGHVENDKSAPWVQDPGQDDDGGGTKSNKQKLSVLFDDEESNAENGTEEGASTPSTSTNDSNAATPRSKWAATLMASTLAREKATGKVMMRNRVDLLPHPREAANKIEYLVMVCKAAQAYASTQAARLSRVRDGQHMINQLRDVSSDLGRQAEKMLAVYDTREVRNSADRLGETLKGVYDLLGDVEGTAIMFGRKRGFGKRVTALVHDIGTRANALLAATSLAIADRPNVLYMADTGGGEPPAPQQQELLKMCIEGDKFFFGRGENPNMSKAFEAYAWAAERGCAEAMYMMAWMYRVGSGSVDADAEQCQRWLERAVDKGYAPAMNDLATTLLEQADRTERAHPELKADVAAADVTADNPTDDADRGLGATRPPAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQVEAEEDASSLPPELAQLFEQVMEKRKRSMQLLQDAAKTGHTEAMTNLGNMQEAMGYFEDARSWYSLAAHPSESANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQGLPQAC 679
            MPRSTPELRLEAP DDGLD  +  DNGLIVDTDEESETPPPYNEGIIQRPSARLVSRRTDD     TS AKT  SPAGSRLLSATSAALTRVKGMTLRSGTSGRVLNPRSVTLVSGLLSPSRGK+GVDNDGADRTSEEDRSR+DRPFSQGHVENDKSAPWVQDPGQDDDGGGTKSNKQKLSVLFDDEESNAENGTEEGAS PSTSTNDSNAATPRSKWAATLMASTLAREKATGK M+RNRVDLLPHPREAANKIEYLVMVCKAAQAYASTQAARLSRVRDGQHMINQLRDV+SDLGRQAEKMLAVYDTREVRNSADRLGETLKGVYDLLGDVEGTAIMFGRKRGFGKRVTALVHDIGTRANALLAATSLAIADRPNVLYMADTGGGEPPAPQQQELLKMCIEGDKFFFGRGENPNMSKAFEAYAWAAERGCAEAMYMMAWMYRVGSGSVDADAEQCQRWLERAVDKGYAPAMNDLATTLLEQADRTERAHPELKADVAAADV AD+PTDDADRGLGATRPP PD         XXXXXXXXXXXXXXXXXXXXXXXX   RQVEAEEDASSLPPELAQLFEQVMEKRKRSMQLLQDAAKTGHTEAMTNLGNMQEAMGYFEDARSWYSLAAHPSESANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQG PQAC
Sbjct:    1 MPRSTPELRLEAPPDDGLD--RVFDNGLIVDTDEESETPPPYNEGIIQRPSARLVSRRTDDNDDGGTSIAKTKQSPAGSRLLSATSAALTRVKGMTLRSGTSGRVLNPRSVTLVSGLLSPSRGKKGVDNDGADRTSEEDRSRKDRPFSQGHVENDKSAPWVQDPGQDDDGGGTKSNKQKLSVLFDDEESNAENGTEEGASIPSTSTNDSNAATPRSKWAATLMASTLAREKATGKAMVRNRVDLLPHPREAANKIEYLVMVCKAAQAYASTQAARLSRVRDGQHMINQLRDVASDLGRQAEKMLAVYDTREVRNSADRLGETLKGVYDLLGDVEGTAIMFGRKRGFGKRVTALVHDIGTRANALLAATSLAIADRPNVLYMADTGGGEPPAPQQQELLKMCIEGDKFFFGRGENPNMSKAFEAYAWAAERGCAEAMYMMAWMYRVGSGSVDADAEQCQRWLERAVDKGYAPAMNDLATTLLEQADRTERAHPELKADVAAADVIADSPTDDADRGLGATRPPTPDDHTSGGSEEXXXXXXXXXXXXXXXXXXXXXXXXDGGRQVEAEEDASSLPPELAQLFEQVMEKRKRSMQLLQDAAKTGHTEAMTNLGNMQEAMGYFEDARSWYSLAAHPSESANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQGFPQAC 677          
BLAST of mRNA_Ecto-sp9_F_contig9941.18008.1 vs.
Match: MYND-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC33_9STRA)

HSP 1 Score: 341 bits (874), Expect = 8.290e-98
Identity = 224/461 (48.59%), Postives = 283/461 (61.39%), Query Frame = 0
Query:  245 LPHPREAANKIEYLVMVCKAAQAYASTQAARLSRVRDGQHMINQLRDVSSDLGRQAEKMLAVYDTREVRNSADRLGETLKGVYDLLGDVEGTAIMFGRKRGFGKRVTALVHDIGTRANALLAATSLAIADRPNVLYMADTGGGEPPAPQQQELLKMCIEGDKFFFGRGENPNMSKAFEAYAWAAERGCAEAMYMMAWMYRVGSGSVDADAEQCQRWLERAVDKGYAPAMNDLATTLLEQADRTERAHPELKADVAAADVTADNPTDDADRGLGATRPPAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQVEAEEDASSLPPELAQLFEQVMEKRKRSMQLLQ-------------------------DAAKTGHTEAMTNLGNMQEAMGYFEDARSWYSLAAHPSES-ANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQGLPQAC 679
            +P   +  NK+++LV VCK+ + YA    A+L  VR G  +I  LRD  +DL RQ +K+LAVYDT EVR SADRLG TL  V+++L DVE  A MFGRK+GFGKRV ALV ++GT AN+LLAATSLAIADRP +LYM D   G PP  + +EL++ C+EGD++++GR   PN  KA  AY WAAERG  EA YM+AWMY+ G   V ADAE+C  WLERAV++GYAPAMN+LA  LLE+A+    A PE++A   A D  A    D AD   G        XXXXXXXXXXXXXXXXXXXX                R+++      +L PE A  F    E RKR+  LLQ                          AA+ GH +AM +LG++ E  G    AR WY LAA P +  ANN RAQN+LG +++ GRG  +D  EA +WF+ +A+QGL  AC
Sbjct:  326 MPREEDVGNKVDFLVAVCKSTEVYAKQLEAKLGTVRSGVALIEGLRDTHADLKRQRDKILAVYDTLEVRRSADRLGTTLTHVFEVLSDVERAARMFGRKKGFGKRVQALVQELGTNANSLLAATSLAIADRPQMLYMVDADDGAPPKHKLEELIQRCLEGDRWYYGREGPPNFEKAHAAYLWAAERGFGEAQYMLAWMYKHGH-FVTADAERCTHWLERAVERGYAPAMNELALLLLEEAEGISAAWPEVQA---AFDELASKAAD-ADA-AGDXXXXXXXXXXXXXXXXXXXXXXXXXXXARDVRGSAAAALGATQRRLQR-----TLSPEAAAKFAAAAELRKRAQSLLQRVRLCVRREVRCVRQLCAAAVPAAVSAARLGHADAMASLGSLLEEAGRVRAARRWYELAAAPGDGGANNARAQNFLGRMYHSGRGAARDPREAARWFKRAAKQGLAAAC 775          
BLAST of mRNA_Ecto-sp9_F_contig9941.18008.1 vs.
Match: Uncharacterized (protein n=2 Tax=unclassified Janthinobacterium TaxID=2610881 RepID=A0A7W9DCQ0_9BURK)

HSP 1 Score: 56.2 bits (134), Expect = 4.330e-5
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 0
Query:  576 ELAQLFEQVMEKRKRSMQLLQDAAKTGHTEAMTNLGNM--QEAMGYFEDARSWYSLAAHPSESANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQG 674
            ELA +++   E+R  ++QL + AA+ G TEA   LG M  Q   G    A  WY  AA    +    +A   LG L   G GVTKD+ EA +W  +S+  G
Sbjct:   63 ELALVYQPRAERRDEALQLFEQAARAGDTEAAFELGQMLRQSQPG---QAWLWYRQAAEQQHA----KAALMLGLLAANGEGVTKDQTEAARWLAVSSELG 156          
BLAST of mRNA_Ecto-sp9_F_contig9941.18008.1 vs.
Match: Uncharacterized (protein n=3 Tax=Rhizobium TaxID=379 RepID=A0A2A6JME5_9HYPH)

HSP 1 Score: 54.3 bits (129), Expect = 8.410e-5
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0
Query:  633 PSESANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQ 673
            P  +A +P+AQ  LG+LF  GRGVTKD D+AV WFR +A Q
Sbjct:   48 PQAAAGDPQAQTALGSLFASGRGVTKDDDQAVAWFRKAAEQ 88          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9941.18008.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Sel10.000e+094.70domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
MYND-type8.290e-9848.59domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized4.330e-537.62protein n=2 Tax=unclassified Janthinobacterium Tax... [more]
Uncharacterized8.410e-558.54protein n=3 Tax=Rhizobium TaxID=379 RepID=A0A2A6JM... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 640..675
e-value: 8.4E-9
score: 45.2
coord: 397..432
e-value: 240.0
score: 1.6
coord: 604..635
e-value: 280.0
score: 1.1
coord: 433..469
e-value: 6.9E-6
score: 35.6
coord: 676..710
e-value: 2.4E-6
score: 37.1
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 676..710
e-value: 3.7E-6
score: 27.4
coord: 640..674
e-value: 1.4E-7
score: 31.9
coord: 433..469
e-value: 5.8E-7
score: 30.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 387..506
e-value: 5.6E-15
score: 56.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 562..710
e-value: 3.5E-35
score: 124.1
NoneNo IPR availablePANTHERPTHR11102:SF150coord: 394..483
coord: 414..708
NoneNo IPR availablePANTHERPTHR11102SEL-1-LIKE PROTEINcoord: 414..708
NoneNo IPR availablePANTHERPTHR11102SEL-1-LIKE PROTEINcoord: 394..483
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 407..485
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 584..709

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9941contigEcto-sp9_F_contig9941:536..4875 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9941.18008.1mRNA_Ecto-sp9_F_contig9941.18008.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9941 536..4875 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9941.18008.1 ID=prot_Ecto-sp9_F_contig9941.18008.1|Name=mRNA_Ecto-sp9_F_contig9941.18008.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=710bp
MPRSTPELRLEAPLDDGLDSSKGSDNGLIVDTDEESETPPPYNEGIIQRP
SARLVSRRTDDNDDGGTSSAKTTPSPAGSRLLSATSAALTRVKGMTLRSG
TSGRVLNPRSVTLVSGLLSPSRGKRGVDNDGADRTSEEDRSRRDRPFSQG
HVENDKSAPWVQDPGQDDDGGGTKSNKQKLSVLFDDEESNAENGTEEGAS
TPSTSTNDSNAATPRSKWAATLMASTLAREKATGKVMMRNRVDLLPHPRE
AANKIEYLVMVCKAAQAYASTQAARLSRVRDGQHMINQLRDVSSDLGRQA
EKMLAVYDTREVRNSADRLGETLKGVYDLLGDVEGTAIMFGRKRGFGKRV
TALVHDIGTRANALLAATSLAIADRPNVLYMADTGGGEPPAPQQQELLKM
CIEGDKFFFGRGENPNMSKAFEAYAWAAERGCAEAMYMMAWMYRVGSGSV
DADAEQCQRWLERAVDKGYAPAMNDLATTLLEQADRTERAHPELKADVAA
ADVTADNPTDDADRGLGATRPPAPDDHTSGGSEEGLPDGGSSGDGVGGTG
QGEGNCKGVGGRQVEAEEDASSLPPELAQLFEQVMEKRKRSMQLLQDAAK
TGHTEAMTNLGNMQEAMGYFEDARSWYSLAAHPSESANNPRAQNYLGTLF
YEGRGVTKDRDEAVKWFRLSARQGLPQACQNLGMCYQTGAGVEKDLPKAI
ELFRQAVEGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf