prot_Ecto-sp9_F_contig988.17952.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig988.17952.1
Unique Nameprot_Ecto-sp9_F_contig988.17952.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length116
Homology
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 2.550e-83
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
Query:    1 MPWPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
            MPWPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN
Sbjct:    1 MPWPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115          
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.570e-50
Identity = 70/115 (60.87%), Postives = 95/115 (82.61%), Query Frame = 0
Query:    1 MPWPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
            M WPFCP+CG+VL  PE GD+ C +C   +++ESFG+VE++T+S  R  P W+ +++ KG +++ +RATV+E CPKCGHP+MEFYTMQLRSADEGQTVFYECL+K C+HK++VNN
Sbjct:    1 MTWPFCPTCGAVLALPEYGDVECGNCKAEMTFESFGKVELITQSAPRPLPRWVEELENKGIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115          
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 132 bits (332), Expect = 1.190e-37
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 0
Query:    5 FCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
            FCP CG++LD P++ +I+C  C  R +YE+   + VVT S+ +  P+WL   Q   E +   RATVEE CPKCG+P+M++YTMQLRSADEGQTVFYEC  K C HK++VNN
Sbjct:   14 FCPHCGTILDHPDTNNIVCSSCEYRCTYENLPSLSVVTCSEEKPVPKWLKTEQSVNEVKGPARATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122          
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 128 bits (321), Expect = 6.150e-36
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 0
Query:    5 FCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
            FCP CG++LD P++  I+C  C  R  Y+    + V+TRS+++  P+WL   +   E     RATVEE CPKCG+P+M++YT+QLRSADEGQTVFYEC  K C HK++VNN
Sbjct:   17 FCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVITRSEDKPTPKWLDAEKVMSEVTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.470e-36
Identity = 60/110 (54.55%), Postives = 74/110 (67.27%), Query Frame = 0
Query:    5 FCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVN 114
            FC  CGS+LD PE+  I+C  C     Y     +  +T SQ+R EP+W+ +  +  E     RATVEE CPKCGHP+MEFYT+QLRSADEGQTVFYEC  K C H+Y+VN
Sbjct:   16 FCKHCGSILDLPETNSIVCSSCGFTCRYTDLPSLTTITYSQDRPEPKWVKENVQSQEVTGPSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 125 bits (313), Expect = 9.820e-35
Identity = 61/110 (55.45%), Postives = 74/110 (67.27%), Query Frame = 0
Query:    5 FCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVN 114
            FCP CG++LD PE+  I+C  C     Y     +  VT SQ+R EP+W+ Q  +        RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  K C H+Y+VN
Sbjct:   16 FCPHCGTILDLPETNSIVCSACGFTCRYTDLPSLCTVTFSQDRPEPKWVKQDIQSQNVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY4_BRELC)

HSP 1 Score: 124 bits (312), Expect = 1.440e-34
Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = 0
Query:    5 FCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
            FCP CG++LD P++ +I+C  C  R  YE F  +  +T S++R +P+WL       E     RATVEE CPKCG+ +MEFYT+QLRSADEGQTVFYEC  K C HK +VNN
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEHRCRYEDFPSLTFITYSEDRPKPKWLDAEVGMSEVTGPARATVEETCPKCGNREMEFYTLQLRSADEGQTVFYEC--KKCGHKSSVNN 125          
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 124 bits (311), Expect = 2.040e-34
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 0
Query:    5 FCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
            FCP CG++LD P++ +I+C  C  R  Y+    + VVT+S++R  P+WL       E     RATVEE CPKC +P+M++YT+QLRSADEGQTVFYEC  K C HK++VNN
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLPSLSVVTQSEDRPLPKWLDAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.800e-34
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 0
Query:    5 FCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVN 114
            FCP CG++LD PE+  I+C  C     Y     +  VT S++R EP+W+ +  +  E     RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  K C H+Y+VN
Sbjct:   16 FCPHCGTILDLPETNAIVCSSCGYTCRYTDLPSLCTVTFSEDRPEPKWVKEEIQSQEVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X016_GLOUD)

HSP 1 Score: 122 bits (307), Expect = 7.780e-34
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 0
Query:    5 FCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
            FCP CG++LD P++ +I+C  C  R  Y+    + VVT S+++  P+WL   +   E     RATVEE CPKCG+ +M++YT+QLRSADEGQTVFYEC  K C HK++VNN
Sbjct:   15 FCPHCGTILDHPDTNNIVCSACEYRCQYQDLPSLSVVTYSEDKPAPKWLKAEKVMTEVTGPARATVEETCPKCGNLEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 123          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig988.17952.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA-directed2.550e-83100.00RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=28... [more]
DNA-directed1.570e-5060.87RNA polymerase subunit n=1 Tax=Tribonema minus Tax... [more]
DNA-directed1.190e-3754.95RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 ... [more]
DNA-directed6.150e-3652.25RNA polymerase subunit n=22 Tax=Peronosporaceae Ta... [more]
DNA-directed8.470e-3654.55RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=1... [more]
DNA-directed9.820e-3555.45RNA polymerase subunit n=1 Tax=Aphanomyces euteich... [more]
DNA-directed1.440e-3454.05RNA polymerase subunit n=1 Tax=Bremia lactucae Tax... [more]
DNA-directed2.040e-3452.25RNA polymerase subunit n=1 Tax=Plasmopara halstedi... [more]
DNA-directed2.800e-3454.55RNA polymerase subunit n=1 Tax=Aphanomyces stellat... [more]
DNA-directed7.780e-3451.35RNA polymerase subunit n=1 Tax=Globisporangium ult... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 72..113
e-value: 1.5E-13
score: 61.1
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 73..111
e-value: 4.2E-16
score: 58.5
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 70..112
score: 13.031
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 3..115
e-value: 2.5E-24
score: 83.9
NoneNo IPR availableGENE3D2.20.25.10coord: 57..113
e-value: 1.9E-18
score: 67.5
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 5..115
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 5..115
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 66..112
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 5..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig988contigEcto-sp9_F_contig988:15169..17120 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig988.17952.1mRNA_Ecto-sp9_F_contig988.17952.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig988 14940..17909 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig988.17952.1 ID=prot_Ecto-sp9_F_contig988.17952.1|Name=mRNA_Ecto-sp9_F_contig988.17952.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=116bp
MPWPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEP
EWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFY
ECLSKACKHKYAVNN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR019761DNA-dir_RNA_pol-M_15_CS