prot_Ecto-sp9_F_contig987.17945.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig987.17945.1
Unique Nameprot_Ecto-sp9_F_contig987.17945.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length888
Homology
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BLAST of mRNA_Ecto-sp9_F_contig987.17945.1 vs.
Match: Hypothetical (leucine rich repeat zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C1_ECTSI)

HSP 1 Score: 1113 bits (2879), Expect = 0.000e+0
Identity = 704/786 (89.57%), Postives = 712/786 (90.59%), Query Frame = 0 
Query:  102 MGCQTTSGILDLLRWCTPRVLDLEGVSPAVTDSLLLRYPGESCAMLEEVCLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVSGSEGLSDGILKALAGRCPALSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTD---AAVSNFIMESQAVASGSLHSLRLGGCPIGSLTAQALLMRGSCLLELNLDGCSGFGDAAVRMVCRACPGLLELSLLGCSTLTSRGAWHCTQHPSVEALAITIPLLPGPEPIPPAPEKPRXXXXXXXXXHRGDQQHRDADGEAGAAAGVRNDEGIAGAAAEQWACSRCTLLNAERRSTCQACRTPRGTREPPTPPPRAGTSPPASAPLPVSPGSSNGGRRRRGRSPSRXXXXXRSPAARKPPTTPECAPFPLPPVPPSGRLRQLWLELQPAAASGLGAGQDDGGGVRSNPSNRASPAAAARCAFPLRRLAPLLPPGLTSLEVWSANARPVPRSVQRGATSGSRKRPIGRRLGRGGGRSSDGAWRMPSAAAADGGGETPAGIEGAGSSXXXXXXXXXXXXXXXXGDDGDXXDASEGVASGVGVLAGPGDLLSVSQASPSLQELVVSGDPEQAAAAXXXXXXXXXXXXXXXXXXXXXXXGVHATAAAIAYFLSCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXXX--FSRFDSAGTTRPSPPSPLRLLAIFDCPSVPPMAVLEALAAQGGAGLDHVAVGVSQPPQARTREGVDAAGLGLGLGDDGGRVTLASETLKSLHVSGEAALGAVALRCPRLEGVKFVN 882
            MGCQTTSGILDLLRWCTPRVLDLEGVSPAVTDSLLLRYPGESCAMLEEVCLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDV GSEGLSDGILKALAGRCPALST XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AAVSNFIMES+AVASGSLHSLRLGGCPIGSLTAQALLMRGSCLLELNLDGCSGFGDAAVRMVCRACPGLLELSLLGCSTLTSRGAWHC QHPSVE LAIT+ LLPGPEPIPPAPEKPRXXXXXXXXXHRGDQQHRDA+GEA AAAGVRN EG+AGAAAEQWACSRCTLLNAERRSTCQACRTPR TREPPTPPPR GTSPPAS PLPVSPGSSNGGRRRRGRSPS      RSPAARK PTTPECAPFPLP VPPSGRLR+L LELQPAAA GLGA QDDGGGVRSNPSNRASPAAAARCAFPLRRLAPLLPPGLTSLEVWSANARPVPRSVQR ATSG RKRPIGRRLGR GG SS GAWRM SAAA DG GETPAGIEGA   XXXXXXXXXXXXXXXX     X DASEGVASGV VLAGPGDLLSVSQASPSLQELVVSGDPEQAAAA                       GVHATAAAIAYFLSCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXXX  FS FDSAGTTRPSPPSPLRLLAIFDCPSVPPMAVLEALA QGGAGLDHVAVGVS PPQAR REGVDAAGLG GLGDDGGRVTL+SETLK+LHVSGEAALGAVALRCPRLEGV+FVN
Sbjct:    1 MGCQTTSGILDLLRWCTPRVLDLEGVSPAVTDSLLLRYPGESCAMLEEVCLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVGGSEGLSDGILKALAGRCPALSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVSNFIMESEAVASGSLHSLRLGGCPIGSLTAQALLMRGSCLLELNLDGCSGFGDAAVRMVCRACPGLLELSLLGCSTLTSRGAWHCAQHPSVETLAITLSLLPGPEPIPPAPEKPRXXXXXXXXXHRGDQQHRDAEGEARAAAGVRNGEGVAGAAAEQWACSRCTLLNAERRSTCQACRTPRSTREPPTPPPRPGTSPPASGPLPVSPGSSNGGRRRRGRSPSGSPSRSRSPAARKTPTTPECAPFPLPAVPPSGRLRRLCLELQPAAAGGLGAVQDDGGGVRSNPSNRASPAAAARCAFPLRRLAPLLPPGLTSLEVWSANARPVPRSVQRDATSGDRKRPIGRRLGRRGGSSSGGAWRMTSAAA-DGDGETPAGIEGAXXXXXXXXXXXXXXXXXXXXXXXXXGDASEGVASGVAVLAGPGDLLSVSQASPSLQELVVSGDPEQAAAAAGQSPSGVRGADAHTTTATA---GVHATAAAIAYFLSCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSSFDSAGTTRPSPPSPLRLLAIFDCPSVPPMAVLEALAVQGGAGLDHVAVGVSHPPQARAREGVDAAGLGFGLGDDGGRVTLSSETLKNLHVSGEAALGAVALRCPRLEGVEFVN 782
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BLAST of mRNA_Ecto-sp9_F_contig987.17945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL6_9PHAE)

HSP 1 Score: 311 bits (798), Expect = 6.580e-96
Identity = 181/201 (90.05%), Postives = 183/201 (91.04%), Query Frame = 0 
Query:    1 MDIPLRSEDVGHCSLRRYALDKVCSCLASADPAVRAALFSRLRGSCPPAPSHPYSSXXXXXXXXXXXXXXXXXXXP-PAGDEGSSVGIPSSIGDSIITRTGEMGCQTTSGILDLLRWCTPRVLDLEGVSPAVTDSLLLRYPGESCAMLEEVCLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVSGSEGLSDGILK 200
            MDIPLR EDVGHCSLRRYALDKVCSCLASA P VRAALFSRL GS PPAPSHPYSS      XXXXXXXXXXXXX  P GDEGS VGIPSSIGDSIITRTGEMG QT+SGILDLL WCTPRVLDLEGVSPAVTDSLLLRYPGESCAMLEEV LGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVSGSEG+SDGILK
Sbjct:    1 MDIPLRGEDVGHCSLRRYALDKVCSCLASAYPDVRAALFSRLCGSGPPAPSHPYSSSGGAATXXXXXXXXXXXXXXXPPGDEGS-VGIPSSIGDSIITRTGEMGRQTSSGILDLLCWCTPRVLDLEGVSPAVTDSLLLRYPGESCAMLEEVRLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVSGSEGISDGILK 200
[Close]
BLAST of mRNA_Ecto-sp9_F_contig987.17945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX9_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 8.760e-82
Identity = 228/281 (81.14%), Postives = 235/281 (83.63%), Query Frame = 0 
Query:  608 MPSAAAADGGGETPAGIEGAGSSXXXXXXXXXXXXXXXXGDDGDXXDASEGVASGVGVLAGPGDLLSVSQASPSLQELVVSGDPEQAAAAXXXXXXXXXXXXXXXXXXXXXXXGVHATAAAIAYFLSCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXXXFSRFDSAGTTRPSPPSPLRLLAIFDCPSVPPMAVLEALAAQGGAGLDHVAVGVSQ-PPQARTREGVDAAGLGLGLGDDGGRVTLASETLKSLHVSGEAALGAVALRCPRLEGVKFVNCPRLG 887
            MPSAA  DGGGE PAGIEGAGSSXXXXXXXXXXXXXXXX     X DASEGVASGV VLAGPGDLLSVSQASPSLQELVVSGDPEQAAAA                       GVHATAAAIA+FLSCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXX FSRFDS  TTRPSPPSPLRLLAIFDCPSVPPMAVLEALA QGGAGLDHVAVGVS+ PP  R  E VD+AG+GLG  DDGGRVTL+SETLKSLHVSGEAALGAVALR PRLEG++FVNCPRLG
Sbjct:    1 MPSAAV-DGGGENPAGIEGAGSSXXXXXXXXXXXXXXXXXXXX-XGDASEGVASGVVVLAGPGDLLSVSQASPSLQELVVSGDPEQAAAAGPSPSGVRGADAHTTMATA----GVHATAAAIAFFLSCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXXRFSRFDSPATTRPSPPSPLRLLAIFDCPSVPPMAVLEALAVQGGAGLDHVAVGVSKSPPPPRAWESVDSAGVGLG--DDGGRVTLSSETLKSLHVSGEAALGAVALRGPRLEGMEFVNCPRLG 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig987.17945.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Hypothetical0.000e+089.57leucine rich repeat zinc finger protein n=1 Tax=Ec... [more]
Uncharacterized6.580e-9690.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.760e-8281.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 404..428
e-value: 1.9E-5
score: 34.1
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 406..425
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 402..431
score: 9.269
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 102..255
e-value: 1.0E-14
score: 56.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 256..346
e-value: 7.3E-6
score: 27.4
NoneNo IPR availableGENE3D4.10.1060.10coord: 401..436
e-value: 3.7E-6
score: 28.0
NoneNo IPR availablePANTHERPTHR13318UNCHARACTERIZEDcoord: 47..333
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 140..342
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 404..429

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig987contigEcto-sp9_F_contig987:19773..27514 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig987.17945.1mRNA_Ecto-sp9_F_contig987.17945.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig987 19773..27514 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig987.17945.1 ID=prot_Ecto-sp9_F_contig987.17945.1|Name=mRNA_Ecto-sp9_F_contig987.17945.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=888bp
MDIPLRSEDVGHCSLRRYALDKVCSCLASADPAVRAALFSRLRGSCPPAP
SHPYSSSGGAATASPAAAAAALAAVPPAGDEGSSVGIPSSIGDSIITRTG
EMGCQTTSGILDLLRWCTPRVLDLEGVSPAVTDSLLLRYPGESCAMLEEV
CLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVSGSEGLSDGILK
ALAGRCPALSTLKINACSAVTGAFLPRLAEGCPSLTQLSADACTDAAVSN
FIMESQAVASGSLHSLRLGGCPIGSLTAQALLMRGSCLLELNLDGCSGFG
DAAVRMVCRACPGLLELSLLGCSTLTSRGAWHCTQHPSVEALAITIPLLP
GPEPIPPAPEKPRRRAAGGGGGHRGDQQHRDADGEAGAAAGVRNDEGIAG
AAAEQWACSRCTLLNAERRSTCQACRTPRGTREPPTPPPRAGTSPPASAP
LPVSPGSSNGGRRRRGRSPSRSPSRSRSPAARKPPTTPECAPFPLPPVPP
SGRLRQLWLELQPAAASGLGAGQDDGGGVRSNPSNRASPAAAARCAFPLR
RLAPLLPPGLTSLEVWSANARPVPRSVQRGATSGSRKRPIGRRLGRGGGR
SSDGAWRMPSAAAADGGGETPAGIEGAGSSSAKGAGRERQRSGGGGGDDG
DGGDASEGVASGVGVLAGPGDLLSVSQASPSLQELVVSGDPEQAAAAGPS
PSGVRIRGRGADAHTTTATAGVHATAAAIAYFLSCLGSAPPPPSTTGDNR
GSGGSATSGGGGGGGGFSRFDSAGTTRPSPPSPLRLLAIFDCPSVPPMAV
LEALAAQGGAGLDHVAVGVSQPPQARTREGVDAAGLGLGLGDDGGRVTLA
SETLKSLHVSGEAALGAVALRCPRLEGVKFVNCPRLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR032675LRR_dom_sf
IPR036443Znf_RanBP2_sf