prot_Ecto-sp9_F_contig982.17908.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig982.17908.1
Unique Name	prot_Ecto-sp9_F_contig982.17908.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	573

Homology

[Close]

BLAST of mRNA_Ecto-sp9_F_contig982.17908.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W5_ECTSI)

HSP 1 Score: 813 bits (2099), Expect = 7.630e-292
Identity = 510/578 (88.24%), Postives = 514/578 (88.93%), Query Frame = 0

Query:    1 MEAT-VEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDDVGAVLDDHPLPAPEDEGKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDAAEGEESLDDMLEAAEVEFFGGKEEGTTGVAEVKPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SSRRPTGNKALEKQGFDLAAIQSLSRAAGTDNSGVGGAATPGPKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEAEHMQGFADSRSRLELFLAGDGGSEGRNALDVGFDAGGT---EFGDVVXXXXXXXXXXXXXXXXXXXXXXXXXEDAKVDGVAEGRGDEAVLAATMGEEEGGDVGHDGMLSEATDWFLNFVDFVVGWAHYLSAVSMPWGGGVGEISCVSAIYLAIFVRLVVAVAFSGVRVVLGLPAFPAANPTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEGNYSGGGS-LKEL 572
            MEAT VEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDDVGAVLDDHPLPAPEDEGKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDAA+GEESLDDMLEAAEVEFFGGKE+GTTGVAEVKPAA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         XXXXXXXXXXXXXX SSRRPTGNKALEKQGFDLAAIQSLSRAAGTDNSGVGGAATPG KRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEAEHMQGFADSRSRLELFLAGDGGSEGRNALD GFDAG T   EFGDV                          EDAKVDGVAEGRGDEAVLAATMGEEEGGDVGHDGMLSEATDWFLNFVD VVGWAHYLSAVSMPWGGGVGEISCVSAIYLAIFVRLVVAVAFSGVRV+LGLPAFPAANPTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEG+YSGGG  LKEL
Sbjct:    1 MEATAVEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDDVGAVLDDHPLPAPEDEGKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDAAQGEESLDDMLEAAEVEFFGGKEKGTTGVAEVKPAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSSRQRLGDAEGAGLKHAARSDGGXXXXXXXXXXXXXXXSSRRPTGNKALEKQGFDLAAIQSLSRAAGTDNSGVGGAATPGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEAEHMQGFADSRSRLELFLAGDGGSEGRNALDEGFDAGSTAADEFGDV-----GDAYSSSSGSFESAENTEDSEEDAKVDGVAEGRGDEAVLAATMGEEEGGDVGHDGMLSEATDWFLNFVDMVVGWAHYLSAVSMPWGGGVGEISCVSAIYLAIFVRLVVAVAFSGVRVMLGLPAFPAANPTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEGDYSGGGGDLKEL 573

[Close]

BLAST of mRNA_Ecto-sp9_F_contig982.17908.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL1_9PHAE)

HSP 1 Score: 515 bits (1327), Expect = 2.880e-178
Identity = 312/344 (90.70%), Postives = 318/344 (92.44%), Query Frame = 0

Query:  235 LSRAAGTDNSGVGGAATPGPKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEAEHMQGFADSRSRLELFLAGDGGSEGRNALDVGFDAGGT---EFGDVVXXXXXXXXXXXXXXXXXXXXXXXXXEDAKVDGVAEGRGDEAVLAATMGEEEGGDVGHDGMLSEATDWFLNFVDFVVGWAHYLSAVSMPWGGGVGEISCVSAIYLAIFVRLVVAVAFSGVRVVLGLPAFPAANPTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEGNYS---GGGSLKEL 572
            +SRAAGT NSGVGGAATPG KRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEA+HMQGFADSRSRLE FLAGDG SEGR ALDVGFDAG T   EFGDVV XXXXXXXXXXXXXXXXXXXXXX  EDAKVD VAE RGDEAVLAATMGEEE GD   DG+LSEATDWFLNFVD VVGWAHYLSAVSMPW GGVGEISCVSAI+LA+FVRLVVAVAFSGVRVVLGLPAFPAA  TSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEG+YS   GGG LKEL
Sbjct:    1 MSRAAGTGNSGVGGAATPGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEADHMQGFADSRSRLEFFLAGDGVSEGRKALDVGFDAGSTAADEFGDVVDXXXXXXXXXXXXXXXXXXXXXXE-EDAKVDDVAERRGDEAVLAATMGEEEAGD---DGLLSEATDWFLNFVDLVVGWAHYLSAVSMPWRGGVGEISCVSAIHLALFVRLVVAVAFSGVRVVLGLPAFPAAQSTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEGDYSTGGGGGGLKEL 340

[Close]

BLAST of mRNA_Ecto-sp9_F_contig982.17908.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC7_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 1.040e-74
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 0

Query:    1 MEAT-VEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDDVGAVLDDHPLPAPEDEGKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDAAEGEESLDDMLEAAEVEFFGGKEEGTTGVAEVKPAA 140
            MEAT VEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDD+VGAV+DDHPLPAPED GKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDAAEGEESLDDML+AAEVEFFG KEEGTTGVAEVKPAA
Sbjct:    1 MEATAVEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDEVGAVVDDHPLPAPEDAGKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDAAEGEESLDDMLQAAEVEFFGEKEEGTTGVAEVKPAA 141

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig982.17908.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig982.17908.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
Uncharacterized	7.630e-292	88.24	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	2.880e-178	90.70	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.040e-74	95.74	protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 505..509
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 510..531
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 532..572
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 475..485
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 448..474
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..447
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 486..504
None	No IPR available	TMHMM	TMhelix		coord: 413..435
None	No IPR available	TMHMM	TMhelix		coord: 485..507
None	No IPR available	TMHMM	TMhelix		coord: 448..470

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig982	contig	Ecto-sp9_F_contig982:11784..18043 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig982.17908.1	mRNA_Ecto-sp9_F_contig982.17908.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig982 10732..18459 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig982.17908.1 ID=prot_Ecto-sp9_F_contig982.17908.1|Name=mRNA_Ecto-sp9_F_contig982.17908.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=573bp
MEATVEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDD
VGAVLDDHPLPAPEDEGKSASRLAAERRRQRILSRSTERMAKVQGDRVIR
SGDAAEGEESLDDMLEAAEVEFFGGKEEGTTGVAEVKPAAARQQAYFKSG
GGGGSSRDEGGGAVGAAAAQRKPSSRQRLGGAEGAGFKPAARSDGGASRQ
SPPSGGGGGRASSRRPTGNKALEKQGFDLAAIQSLSRAAGTDNSGVGGAA
TPGPKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKF
EAEHMQGFADSRSRLELFLAGDGGSEGRNALDVGFDAGGTEFGDVVDVVD
ADSSSSSSGSFESAENTEDSEEDAKVDGVAEGRGDEAVLAATMGEEEGGD
VGHDGMLSEATDWFLNFVDFVVGWAHYLSAVSMPWGGGVGEISCVSAIYL
AIFVRLVVAVAFSGVRVVLGLPAFPAANPTSKPGMVMGMVLATVPTLGKV
LAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGL
FSPSFQGSEEGNYSGGGSLKEL*