prot_Ecto-sp9_F_contig9732.17835.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9732.17835.1
Unique Name	prot_Ecto-sp9_F_contig9732.17835.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	194

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9732.17835.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC9_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 7.610e-75
Identity = 138/150 (92.00%), Postives = 141/150 (94.00%), Query Frame = 0

Query:   20 MEYERALFRVYDKSMEGFHSRGVRSACNLLQKLFLVASAGFFAALVLLHHQFVNNPGCLAPLLEEAASREGVLILPTVRSITANTTLGEIDTDPEGVIVGGPNQAGXXXXXXXXXXXXXXXXXX-RHPSKIQLPSGNWIPYDVMVGVSIG 168
            MEYERALFRVYDKSMEGFHSRGVRSACNLLQKL LVASAG FAAL LLHHQFVN PGCLAPLLEEAASREGVLILPTVRS+TANTTLGEIDTDPEGVIVGGPNQAGXXXXXXXXXXXXXXXXXX RHPSKIQLPSGNW+PYDVM   + G
Sbjct:    1 MEYERALFRVYDKSMEGFHSRGVRSACNLLQKLVLVASAGLFAALFLLHHQFVNKPGCLAPLLEEAASREGVLILPTVRSVTANTTLGEIDTDPEGVIVGGPNQAGXXXXXXXXXXXXXXXXXXXRHPSKIQLPSGNWVPYDVMDEAAAG 150

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9732.17835.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH19_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 2.720e-73
Identity = 144/167 (86.23%), Postives = 146/167 (87.43%), Query Frame = 0

Query:   20 MEYERALFRVYDKSMEGFHSRGVRSACNLLQKLFLVASAGFFAALVLLHHQFVNNPGCLAPLLEEAASREGVLILPTVRSITANTTLGEIDTDPEGVIVGGPNQAGXXXXXXXXXXXXXXXXXX---------------RHPSKIQLPSGNWIPYDVMVGVSIGDGG 171
            MEYERALFRVYDKSMEGFHSR VRSACNLLQKLFLVASAG FAALVLLHHQFVN PGCLAPLLEEAASREGVLILPTVRSITANTTLGEIDTDPEGVIVGGPNQAG XXXXXXXXXXXX  XXX               RHPSKIQLPSGNW+PYDVMVGVSIG+GG
Sbjct:    1 MEYERALFRVYDKSMEGFHSREVRSACNLLQKLFLVASAGLFAALVLLHHQFVNKPGCLAPLLEEAASREGVLILPTVRSITANTTLGEIDTDPEGVIVGGPNQAGGXXXXXXXXXXXXGGXXXXXXXXXXXXXXXXXDRHPSKIQLPSGNWMPYDVMVGVSIGNGG 167

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9732.17835.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9732.17835.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	7.610e-75	92.00	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	2.720e-73	86.23	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 72..194
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..51
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 52..71
None	No IPR available	TMHMM	TMhelix		coord: 53..72

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9732	contig	Ecto-sp9_F_contig9732:2901..4955 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9732.17835.1	mRNA_Ecto-sp9_F_contig9732.17835.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9732 2901..4955 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9732.17835.1 ID=prot_Ecto-sp9_F_contig9732.17835.1|Name=mRNA_Ecto-sp9_F_contig9732.17835.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=194bp
GRTAHGKERDRGHPPSGGAMEYERALFRVYDKSMEGFHSRGVRSACNLLQ
KLFLVASAGFFAALVLLHHQFVNNPGCLAPLLEEAASREGVLILPTVRSI
TANTTLGEIDTDPEGVIVGGPNQAGGGGAGGGDDENEEEEEDDRHPSKIQ
LPSGNWIPYDVMVGVSIGDGGGSSRGRRRWWGLRGASNDGGGGE