prot_Ecto-sp9_F_contig972.17822.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig972.17822.1
Unique Nameprot_Ecto-sp9_F_contig972.17822.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length137
Homology
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BLAST of mRNA_Ecto-sp9_F_contig972.17822.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL23_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 5.360e-49
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0 
Query:   49 TRLPGGSSTTARRVRPSGLVRLRSSSDESNSEGEPWGWSADQSGREGD-GGGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGK 137
            +RLPGGSSTTARRVRPSGLVRLRSSSDESN EGEPWGWSADQSGREGD GGGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGK
Sbjct:    4 SRLPGGSSTTARRVRPSGLVRLRSSSDESNFEGEPWGWSADQSGREGDDGGGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGK 93
[Close]
BLAST of mRNA_Ecto-sp9_F_contig972.17822.1 vs.
Match: zinc_ribbon_2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD2_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 7.410e-39
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 0 
Query:   49 TRLPGGSSTTARRVRPSGLVRLRSSSDESNSEGEPWGWSADQSGREGDG-GGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGK 137
            +RLPGG+S  A RVR SG VRLRSSSDESNSEGEPWGWSADQSGREGD  GGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGK
Sbjct:    4 SRLPGGTSKAACRVRSSGHVRLRSSSDESNSEGEPWGWSADQSGREGDDRGGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGK 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig972.17822.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.360e-4996.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
zinc_ribbon_27.410e-3990.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..137
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.521

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig972contigEcto-sp9_F_contig972:1480..3264 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig972.17822.1mRNA_Ecto-sp9_F_contig972.17822.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig972 1480..3264 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig972.17822.1 ID=prot_Ecto-sp9_F_contig972.17822.1|Name=mRNA_Ecto-sp9_F_contig972.17822.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=137bp
MQNLRRPLVACCVLHLAPSSAFLPGCRSVGRFAAQRCAGHRCGATSGTTR
LPGGSSTTARRVRPSGLVRLRSSSDESNSEGEPWGWSADQSGREGDGGGA
GGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGK
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