prot_Ecto-sp9_F_contig9715.17819.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9715.17819.1
Unique Nameprot_Ecto-sp9_F_contig9715.17819.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length229
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9715.17819.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA8_ECTSI)

HSP 1 Score: 387 bits (995), Expect = 3.030e-134
Identity = 206/229 (89.96%), Postives = 208/229 (90.83%), Query Frame = 0 
Query:    1 MQSLVLVDDYSRPAAATAGPAKGDRSLLPLGLISKPPAAEHGTGGNNNSNAATAGRPQRPTGEPPSDHLYVRAEGCPSTLPPPPAGPPVMVLFPATLPLSIFLAPPPPATLASGVLTLLAILGSWGWGWELVSAAGVGSGLAXXXXXXLGVRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVRPECAPVLFLLSGTTADVALGFLLTSLLQV 229
            MQSLVLVDDYSRPAAATAGPAKGDRSLLPLGLISKPPAAEHGTG         AGRPQRPTGEP SD LYVRAEGCPSTLPPPPAGPPVMVLFPATLPLSIFLAPPPPATLASGVLTLLAILGSWG    LVSAAGVGSGLA      LGVRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYV+PECAPVLFLLSGTTADVALGFLLTSLLQ+
Sbjct:    1 MQSLVLVDDYSRPAAATAGPAKGDRSLLPLGLISKPPAAEHGTGXXXXXXXXAAGRPQRPTGEPLSDPLYVRAEGCPSTLPPPPAGPPVMVLFPATLPLSIFLAPPPPATLASGVLTLLAILGSWGXXXXLVSAAGVGSGLAAGLTAGLGVRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQI 229
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BLAST of mRNA_Ecto-sp9_F_contig9715.17819.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJL3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.390e-29
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0 
Query:  163 GLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVRPECAPVLFLLSGTTADVALGFLLTSLLQ 228
            G SVLGIALLGGGKASLTFGMSLGL+TLWRHGWWLYV+PECAPV FLLSGTTADVALGFLLTSLLQ
Sbjct: 1214 GQSVLGIALLGGGKASLTFGMSLGLTTLWRHGWWLYVQPECAPVFFLLSGTTADVALGFLLTSLLQ 1279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9715.17819.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.030e-13489.96protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA8... [more]
Uncharacterized1.390e-2993.94protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 111..128
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 206..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..104
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 129..133
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 105..110
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 228..229
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 163..186
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..84
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 187..205
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 152..162
NoneNo IPR availableTMHMMTMhelixcoord: 205..227
NoneNo IPR availableTMHMMTMhelixcoord: 99..121
NoneNo IPR availableTMHMMTMhelixcoord: 163..185
NoneNo IPR availableTMHMMTMhelixcoord: 131..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9715contigEcto-sp9_F_contig9715:3146..4754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9715.17819.1mRNA_Ecto-sp9_F_contig9715.17819.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9715 3137..4754 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9715.17819.1 ID=prot_Ecto-sp9_F_contig9715.17819.1|Name=mRNA_Ecto-sp9_F_contig9715.17819.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=229bp
MQSLVLVDDYSRPAAATAGPAKGDRSLLPLGLISKPPAAEHGTGGNNNSN
AATAGRPQRPTGEPPSDHLYVRAEGCPSTLPPPPAGPPVMVLFPATLPLS
IFLAPPPPATLASGVLTLLAILGSWGWGWELVSAAGVGSGLAAGLAAGLG
VRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVR
PECAPVLFLLSGTTADVALGFLLTSLLQV
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