prot_Ecto-sp9_F_contig9619.17734.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9619.17734.1
Unique Name	prot_Ecto-sp9_F_contig9619.17734.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	192

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9619.17734.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 1.400e-126
Identity = 183/191 (95.81%), Postives = 184/191 (96.34%), Query Frame = 0

Query:    1 MGPEHTNGNGSDIRITPPFKMEEGGGDGGKRVNGGGMAGAEERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGGPFSRRRGRNGSGERDQFHADLPSSSDSTSSGNGPGMM 191
            MGPEHTNGNGSDIRITPPFKMEEGGGDGGKRVNG  MAG EERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNR CSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLG PFSR RGRNGSGERDQFHADLPSSSDSTS+GN PGMM
Sbjct:   51 MGPEHTNGNGSDIRITPPFKMEEGGGDGGKRVNGXXMAGGEERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGAPFSRSRGRNGSGERDQFHADLPSSSDSTSTGNEPGMM 241

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BLAST of mRNA_Ecto-sp9_F_contig9619.17734.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 4.980e-89
Identity = 139/148 (93.92%), Postives = 139/148 (93.92%), Query Frame = 0

Query:    1 MGPEHTNGNG--SDIRITPPFKMEEGGGDGGKRVNGGGMAGAEERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVCYSG 146
            MGPE  NGNG  SDIRITPPFKMEEGGG GGK VNGGGMAG EERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVC  G
Sbjct:  106 MGPEDANGNGKRSDIRITPPFKMEEGGGSGGKGVNGGGMAGGEERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVCSWG 253

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9619.17734.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9619.17734.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	1.400e-126	95.81	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	4.980e-89	93.92	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..86
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 111..129
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 153..191
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 130..152
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 87..110
None	No IPR available	TMHMM	TMhelix		coord: 91..113
None	No IPR available	TMHMM	TMhelix		coord: 126..148

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9619	contig	Ecto-sp9_F_contig9619:250..3053 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9619.17734.1	mRNA_Ecto-sp9_F_contig9619.17734.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9619 107..3272 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9619.17734.1 ID=prot_Ecto-sp9_F_contig9619.17734.1|Name=mRNA_Ecto-sp9_F_contig9619.17734.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=192bp
MGPEHTNGNGSDIRITPPFKMEEGGGDGGKRVNGGGMAGAEERRDSMGDE
SIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAG
WSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCC
MLGGPFSRRRGRNGSGERDQFHADLPSSSDSTSSGNGPGMM*