prot_Ecto-sp9_F_contig9498.17631.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9498.17631.1
Unique Nameprot_Ecto-sp9_F_contig9498.17631.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length272
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9498.17631.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.650e-28
Identity = 136/167 (81.44%), Postives = 137/167 (82.04%), Query Frame = 0 
Query:   13 APATVPSWTDAGGSHSSRTAARAGGGSNSDPDSNATTPRSGADSLTPLGAAVPPRLSSSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVEPGGRNNSGSSIENGSRXXXXXXXXX----DGGNRXXXXXXXXXXVGRGSGSIDSLATDTAASSLHGYG 175
            APATVPSWTDAGGSHSSRTAARAGGGSN+DPDSNATTPRSGADSLTPLGAAVPPRLSSSPR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXX    D   RXXXXXXXX  VGRGSGSIDSLATDTAASSLHGYG
Sbjct:   85 APATVPSWTDAGGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHRVRXXXXXXXXDDVGRGSGSIDSLATDTAASSLHGYG 251
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9498.17631.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU66_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 8.110e-17
Identity = 164/253 (64.82%), Postives = 165/253 (65.22%), Query Frame = 0 
Query:   30 RTAARAGGGSNSDPDSNATTPRSGADSLTPLGAAVPPRLSSSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVEPGGRNNSGSSIENGSRXXXXXXXXXDGGNRXXXXXXXXXX----------VGRGSGSIDSLATDTAASSLHGYGGGGSDWDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGGAATGSPRLGGGGY 272
            RTAARAG GSN+DPDSNATTPRSGADSLTPLGAAVPPRLSSSPR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXX     XXXXXXXXXX          VGRGSGSIDSLATDTAASSLHGYG    DWD S                   XXXXXXXXX                       XXXXXXXXXXXXXXXXXX  ERGG ATGSPRLGGGGY
Sbjct:  134 RTAARAGDGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDVGRGSGSIDSLATDTAASSLHGYGXXXXDWDVSKEEDGGRGGEPGLDGVLAAXXXXXXXXXEVAGGARVSITPANTQHHVSESLXXXXXXXXXXXXXXXXXXGFERGGPATGSPRLGGGGY 386
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9498.17631.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.650e-2881.44protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized8.110e-1764.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9498contigEcto-sp9_F_contig9498:61..876 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9498.17631.1mRNA_Ecto-sp9_F_contig9498.17631.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9498 61..876 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9498.17631.1 ID=prot_Ecto-sp9_F_contig9498.17631.1|Name=mRNA_Ecto-sp9_F_contig9498.17631.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=272bp
MSSILIPTQSASAPATVPSWTDAGGSHSSRTAARAGGGSNSDPDSNATTP
RSGADSLTPLGAAVPPRLSSSPREEYRSGGGGGGGFTPQYGSSATTTAAG
STTTEESFPVEPGGRNNSGSSIENGSRSGRGGGGGGDGGNRGGGGGGDGN
DVGRGSGSIDSLATDTAASSLHGYGGGGSDWDASKEEDGGGGGEPGLDGV
LAAAAAALAAAEEVAGGARVSTTPANTQHHVSESLPPPPPPLSLGSSSTD
AGGGFERGGAATGSPRLGGGGY
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