prot_Ecto-sp9_F_contig9440.17591.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9440.17591.1
Unique Nameprot_Ecto-sp9_F_contig9440.17591.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length98
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9440.17591.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA8_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 5.490e-39
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:   25 KAVSLLEEMRAVGLTPVSSTYLPAIDACYRAGQGKVGYALTKQRDAAQRRMRRHPDFASTRRSQQRKLLRPYE 97
            KAVSLLEEMRAVGLTPVSSTYLPAIDACYRAGQGKVGYALTKQRDAAQRRMRRHPDFASTRRSQQRKLL+PYE
Sbjct:  187 KAVSLLEEMRAVGLTPVSSTYLPAIDACYRAGQGKVGYALTKQRDAAQRRMRRHPDFASTRRSQQRKLLQPYE 259
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BLAST of mRNA_Ecto-sp9_F_contig9440.17591.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG38_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.210e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0 
Query:   54 RAGQGKVGYALTKQRDAAQRRMRRHPDFASTRRSQQRKLLRPYE 97
            RAGQGKVGYALTKQRDAAQR MRRHPDFASTRRSQQRKLL+PYE
Sbjct: 1043 RAGQGKVGYALTKQRDAAQRSMRRHPDFASTRRSQQRKLLQPYE 1086
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9440.17591.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.490e-3998.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.210e-1695.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..94
e-value: 5.0E-13
score: 51.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 5..52
e-value: 6.5E-8
score: 32.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 8..40
e-value: 2.6E-7
score: 28.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 6..40
score: 10.786

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9440contigEcto-sp9_F_contig9440:3259..3891 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9440.17591.1mRNA_Ecto-sp9_F_contig9440.17591.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9440 2494..3938 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9440.17591.1 ID=prot_Ecto-sp9_F_contig9440.17591.1|Name=mRNA_Ecto-sp9_F_contig9440.17591.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=98bp
MGLFPSVVSYNIAIACCGAADEWQKAVSLLEEMRAVGLTPVSSTYLPAID
ACYRAGQGKVGYALTKQRDAAQRRMRRHPDFASTRRSQQRKLLRPYE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat