prot_Ecto-sp9_F_contig9420.17577.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9420.17577.1
Unique Nameprot_Ecto-sp9_F_contig9420.17577.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length320
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9420.17577.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF8_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 8.010e-172
Identity = 285/318 (89.62%), Postives = 285/318 (89.62%), Query Frame = 0 
Query:    1 VNFTDTVFSDNWSGGNGGGLWAFLTASNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLEGNEADAQGGGMAIDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVSGGFMRGNSAELSASNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAVSATGGTNFTSNVAEIGGGAVNAWGSGSSFWASEXXXXXXXXAEGAAAAAARSTSSGSDSSGDSYSPTVDPAGPAGGAIYVTNEGAVSVLDSTLSENSAHGRGGGLYCAGDANVTVARAGFAGHESGVGGGG 318
            VNFTDT FSDNWSGGNG GLWAFLTA NLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLEGNEA AQGGGMAIDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFV GGFMRGNSAEL A  LWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAVSATGGTNFTSNVAEIGGGAVNAWGS        XXXXXXXX               SDSSGDSYSPTVDP GPAGGAIYVTN GAVSVLDSTLSENSAHGRGGGLYCAGDANVTVARAGFAGHESGVGGGG
Sbjct:  344 VNFTDTAFSDNWSGGNGAGLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLEGNEAGAQGGGMAIDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVRGGFMRGNSAELGAWGLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAVSATGGTNFTSNVAEIGGGAVNAWGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SDSSGDSYSPTVDPGGPAGGAIYVTNGGAVSVLDSTLSENSAHGRGGGLYCAGDANVTVARAGFAGHESGVGGGG 660
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BLAST of mRNA_Ecto-sp9_F_contig9420.17577.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM3_9PHAE)

HSP 1 Score: 412 bits (1060), Expect = 9.440e-133
Identity = 237/320 (74.06%), Postives = 250/320 (78.12%), Query Frame = 0 
Query:    1 VNFTDTVFSDNWSGGNGGGLWAFLTASNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLEGNEADAQGGGMAIDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVSGGFMRGNSAELSASNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAVSATGGTNFTSNVAEIGGGAVNAWGSGSSFWASEXXXXXXXXAEGAAAAAARSTSSGSDSSGDSYSPTVDPAGPAGGAIYVTNEGAVSVLDSTLS-------ENSAHGRGGGLYCAGD-ANVTVARAGFAGHES 312
            VNFTDTV SDNWSGGNGGGLWAFL A NL LLRTNFSNNAVAYREGFFDVP SHRGGGVWVSG+GEM VQAE CHLEGNEADAQGGGMA+DGGVLRAA CGFSGNVAGRGGAIAA         VVFVSGG+MRGNSAEL + NLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGG SLSAGSAVSATGGT+FTSNVAEIGGGAVN WGSGSSFWASE        A GA           SDSSGDSYSPTVDP GPAGGAIYVTN GAV+   S L+       +N A G   G+Y  G+   V V  + F G+ +
Sbjct:  194 VNFTDTVLSDNWSGGNGGGLWAFLNAGNLILLRTNFSNNAVAYREGFFDVPGSHRGGGVWVSGNGEMTVQAEGCHLEGNEADAQGGGMAVDGGVLRAADCGFSGNVAGRGGAIAAXXXXXXXXXVVFVSGGYMRGNSAELISWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGGSLSAGSAVSATGGTSFTSNVAEIGGGAVNTWGSGSSFWASEGCGFTGNVAGGAXXXXXXXXXX-SDSSGDSYSPTVDPGGPAGGAIYVTNGGAVAENGSDLTAAGCAFADNQAGGXXXGVYGTGEETRVIVESSSFTGNAA 512
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BLAST of mRNA_Ecto-sp9_F_contig9420.17577.1 vs.
Match: InlB (B-repeat-containing protein n=1 Tax=Treponema vincentii TaxID=69710 RepID=UPI001BAEC1BD)

HSP 1 Score: 56.2 bits (134), Expect = 5.080e-5
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 0 
Query:   77 EGNEADAQGGGMAIDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVSGGFMRGNSAELSASNLWYGYGGGLFAQDGAQAVLDG-VALDGNSAGFGGGV 179
            EG++    GG + + G  ++  GC  + N A + G    A + DD+AA V +SGG + GN+         YG+GGG++  DG +  L G V + GN A  GGGV
Sbjct:  896 EGSDGPGDGGAIYVHGASVKITGCTLTDNTANKNGGAVYATKRDDNAAHVTISGGSINGNTVTDD-----YGFGGGIYINDGCELTLKGNVTVKGNKAARGGGV 994
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9420.17577.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized8.010e-17289.62protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized9.440e-13374.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
InlB5.080e-536.54B-repeat-containing protein n=1 Tax=Treponema vinc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 3..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9420contigEcto-sp9_F_contig9420:3751..4710 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9420.17577.1mRNA_Ecto-sp9_F_contig9420.17577.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9420 3751..4710 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9420.17577.1 ID=prot_Ecto-sp9_F_contig9420.17577.1|Name=mRNA_Ecto-sp9_F_contig9420.17577.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=320bp
VNFTDTVFSDNWSGGNGGGLWAFLTASNLTLLRTNFSNNAVAYREGFFDV
PNSHRGGGVWVSGDGEMAVQAEDCHLEGNEADAQGGGMAIDGGVLRAAGC
GFSGNVAGRGGAIAAAGEDDDSAAVVFVSGGFMRGNSAELSASNLWYGYG
GGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAVSATGGTNFTSNVA
EIGGGAVNAWGSGSSFWASEGCGFTGNVAEGAAAAAARSTSSGSDSSGDS
YSPTVDPAGPAGGAIYVTNEGAVSVLDSTLSENSAHGRGGGLYCAGDANV
TVARAGFAGHESGVGGGGGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence