prot_Ecto-sp9_F_contig942.17576.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig942.17576.1
Unique Nameprot_Ecto-sp9_F_contig942.17576.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length64
Homology
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: Nucleolar (protein 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSK9_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.800e-39
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPPIIL 63
            MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPPIIL
Sbjct:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPPIIL 63          
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H2Y9_ACACA)

HSP 1 Score: 98.2 bits (243), Expect = 1.010e-25
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0
Query:    1 MHLMYYLE-NGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPP 60
            MHLMYYL+ +GKRVYTLKK+NP G  T SAHPARFSPDDKFS  RV  K RFG+LPTQQPP
Sbjct:    1 MHLMYYLDKDGKRVYTLKKSNPEGTATVSAHPARFSPDDKFSRQRVTLKKRFGILPTQQPP 61          
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2C6_PLABS)

HSP 1 Score: 97.4 bits (241), Expect = 1.990e-25
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0
Query:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPPI 61
            MHLMYY+E+GKRVYTLKK +P G  T SAHPARFSPDDK+S  RV  K RFG+LPTQQ PI
Sbjct:    1 MHLMYYMEDGKRVYTLKKVDPRGMPTHSAHPARFSPDDKYSRERVTIKKRFGILPTQQAPI 61          
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZ39_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 6.680e-24
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPP 60
            M+LMYY E GKRVYTLKK  P    TESAHPARFSPDDK+S  RV  K RFG+LPTQ+PP
Sbjct:    1 MYLMYYTEEGKRVYTLKKVTPGDQPTESAHPARFSPDDKYSRERVTCKKRFGILPTQRPP 60          
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: H/ACA (ribonucleoprotein complex subunit 3 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000874AB97)

HSP 1 Score: 92.8 bits (229), Expect = 1.350e-23
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0
Query:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQP 59
            M+LMYYLENGKRVYTLKK +P GN TESAHPARFSP+DK+S  R+  K+R+G+L TQ+P
Sbjct:    1 MYLMYYLENGKRVYTLKKTDPWGNPTESAHPARFSPEDKYSKQRIIIKSRYGLLKTQKP 59          
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: Nucleolar (protein 10 n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WVP2_GLOUD)

HSP 1 Score: 92.0 bits (227), Expect = 2.870e-23
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 MHLMYYL-ENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQP 59
            MHLMYYL E+GKRVYTLKK +P+G  T SAHPARFSPDDKFS  R+  K RFG+LPTQ P
Sbjct:    1 MHLMYYLGEDGKRVYTLKKEDPSGKPTHSAHPARFSPDDKFSKERIITKKRFGLLPTQTP 60          
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: Nucleolar (protein 10 n=16 Tax=Peronosporaceae TaxID=4777 RepID=H3G7J4_PHYRM)

HSP 1 Score: 91.3 bits (225), Expect = 5.220e-23
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 MHLMYYL-ENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQP 59
            MHLMYYL ++GKRVYTLKK  PAG+ T SAHPARFSPDDKFS  R+  K RFG+LPTQ P
Sbjct:    1 MHLMYYLGDDGKRVYTLKKETPAGSPTCSAHPARFSPDDKFSKERITTKKRFGLLPTQSP 60          
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.020e-23
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 MHLMYYL-ENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQP 59
            MHLMYY+ E+GKRVYTLKK +P G+ T SAHPARFSPDDKFS  RV NK RFG+L TQ P
Sbjct:    1 MHLMYYMGEDGKRVYTLKKEDPTGSPTVSAHPARFSPDDKFSHQRVVNKKRFGILLTQSP 60          
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: H/ACA (ribonucleoprotein complex subunit NOP10 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HHH4_SPIPD)

HSP 1 Score: 90.9 bits (224), Expect = 8.230e-23
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0
Query:    1 MHLMYYL-ENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQ 58
            MHLMYYL E+GKRVYTLKK  P G++T+SAHPARFSPDDK+S  RV  K RFG+LPTQQ
Sbjct:    1 MHLMYYLDESGKRVYTLKKLTPEGSVTKSAHPARFSPDDKYSRHRVTLKRRFGLLPTQQ 59          
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S3U4_NEMVE)

HSP 1 Score: 90.1 bits (222), Expect = 1.620e-22
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0
Query:    1 MHLMYYLEN-GKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQ 58
            MHLMYY++N GKRVYTLKK +P+G  T SAHPARFSPDDK+S  RV  K RFG+LPTQQ
Sbjct:    1 MHLMYYMDNDGKRVYTLKKQDPSGKPTTSAHPARFSPDDKYSRHRVTLKKRFGILPTQQ 59          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig942.17576.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Nucleolar1.800e-39100.00protein 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7F... [more]
Nucleolar1.010e-2577.05protein 10 n=1 Tax=Acanthamoeba castellanii str. N... [more]
Nucleolar1.990e-2573.77protein 10 n=1 Tax=Plasmodiophora brassicae TaxID=... [more]
Nucleolar6.680e-2471.67protein 10 n=1 Tax=Chloropicon primus TaxID=176429... [more]
H/ACA1.350e-2371.19ribonucleoprotein complex subunit 3 n=1 Tax=Anoplo... [more]
Nucleolar2.870e-2373.33protein 10 n=3 Tax=Pythiaceae TaxID=4782 RepID=K3W... [more]
Nucleolar5.220e-2373.33protein 10 n=16 Tax=Peronosporaceae TaxID=4777 Rep... [more]
Nucleolar8.020e-2373.33protein 10 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
H/ACA8.230e-2374.58ribonucleoprotein complex subunit NOP10 n=2 Tax=Sp... [more]
Nucleolar1.620e-2272.88protein 10 n=1 Tax=Nematostella vectensis TaxID=45... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PFAMPF04135Nop10pcoord: 4..51
e-value: 4.3E-18
score: 65.1
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PANTHERPTHR13305RIBOSOME BIOGENESIS PROTEIN NOP10coord: 1..60
IPR036756H/ACA ribonucleoprotein complex, subunit Nop10 superfamilyGENE3D2.20.28.40coord: 9..55
e-value: 1.8E-7
score: 32.9
IPR036756H/ACA ribonucleoprotein complex, subunit Nop10 superfamilySUPERFAMILY144210Nop10-like SnoRNPcoord: 1..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig942contigEcto-sp9_F_contig942:24798..26745 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig942.17576.1mRNA_Ecto-sp9_F_contig942.17576.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig942 24798..26745 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig942.17576.1 ID=prot_Ecto-sp9_F_contig942.17576.1|Name=mRNA_Ecto-sp9_F_contig942.17576.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=64bp
MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKAR
FGVLPTQQPPIIL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007264H/ACA_rnp_Nop10
IPR036756H/ACA_rnp_Nop10_sf