prot_Ecto-sp9_F_contig9349.17508.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9349.17508.1
Unique Nameprot_Ecto-sp9_F_contig9349.17508.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length163
Homology
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: RNA (helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I0_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 4.490e-103
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            MRVVVMSATLDAEKFQKYFD+APLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV
Sbjct:  200 MRVVVMSATLDAEKFQKYFDNAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 362          
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L043_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 5.680e-103
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            MRVVVMSATLDAEKFQKYFD+APLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV
Sbjct:  134 MRVVVMSATLDAEKFQKYFDNAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 296          
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: RNA (helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU4_9STRA)

HSP 1 Score: 257 bits (656), Expect = 4.900e-79
Identity = 129/163 (79.14%), Postives = 142/163 (87.12%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            ++VVVMSATLDA KFQ YFD APLLKVPGR FPVEIFYTP PERDYVEAAVRTVVQIH+CE+PGD+L+FLTGE+EIE AC  IR+E  +       GE+ VYPLYSSL P AQQKIFR+APGPK+PGGP GRKVVVSTN+AETSLTIDGIVYVVDPGFSKQKV
Sbjct:  202 LKVVVMSATLDAGKFQTYFDSAPLLKVPGRMFPVEIFYTPEPERDYVEAAVRTVVQIHRCEEPGDILVFLTGELEIETACAQIRSECAQFAGSETVGEVMVYPLYSSLAPQAQQKIFRDAPGPKYPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKV 364          
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: RNA (helicase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ15_9STRA)

HSP 1 Score: 252 bits (643), Expect = 4.550e-77
Identity = 124/163 (76.07%), Postives = 141/163 (86.50%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            ++VVVMSATLDA KFQ+YF+ APLLKVPGR +PVEIFY P PERDYVEAA+RTV+QIHKCE+PGD+LLFLTGE EIED CR +R E   S +   EGE+ V+PLYSSLPP  QQ IF+ APGP+FPGGP GRKVVVSTN+AETSLTIDG+VYVVDPGFSKQKV
Sbjct:  215 LKVVVMSATLDALKFQEYFNSAPLLKVPGRMYPVEIFYVPEPERDYVEAAIRTVIQIHKCEEPGDILLFLTGEQEIEDTCRKLRDEAGNSDE--NEGEMVVFPLYSSLPPKQQQLIFQSAPGPRFPGGPPGRKVVVSTNIAETSLTIDGVVYVVDPGFSKQKV 375          
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBT4_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.620e-76
Identity = 125/163 (76.69%), Postives = 140/163 (85.89%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            M++VVMSATLDAEKFQKYF DAPLL+VPGR F VE+FYTP PERDYV+AA+RT +QIH CE+PGD+L+FLTGE EIEDACR IR E   +   +  GELAVYPLYSSLPP  QQKIF EAPGP+ PG P GRKVVVSTN+AETSLTIDGIVYVVDPGFSKQK+
Sbjct:  216 MKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTALQIHLCEEPGDILVFLTGEEEIEDACRKIRDE--SANYTSTHGELAVYPLYSSLPPTQQQKIFSEAPGPQAPGAPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKI 376          
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: Probable (pre-mrna-splicing factor atp-dependent rna helicase-like n=27 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B0E0_PLAHL)

HSP 1 Score: 248 bits (634), Expect = 9.030e-76
Identity = 127/163 (77.91%), Postives = 141/163 (86.50%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            ++VVVMSATLDA KFQKYF+ APL+ +PGRTFPVEIFYTP PERDY+EAAVRT VQIH CED GDVLLFLTG+ EIE+ACR IRAE E + D TK G L VYPLYS+L P  QQ IF+EAP P+FPGGP GRK+VVSTNVAETSLTIDGIVYV+DPGFSKQKV
Sbjct:  207 LKVVVMSATLDAVKFQKYFEGAPLIAIPGRTFPVEIFYTPEPERDYLEAAVRTAVQIHICEDEGDVLLFLTGQEEIENACRQIRAEAE-ALDSTKYGPLDVYPLYSALTPQQQQLIFKEAPPPRFPGGPKGRKIVVSTNVAETSLTIDGIVYVIDPGFSKQKV 368          
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI10_PYTOL)

HSP 1 Score: 249 bits (636), Expect = 9.910e-76
Identity = 125/163 (76.69%), Postives = 142/163 (87.12%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            ++VVVMSATLDA+KFQ YFD APL+ +PGRTFPVEIFYTP PERDYVEAA+RT VQIH CED GD+L+FLTG+ EIE ACR I+AE + S D +K G LAVYPLYS+LPP  QQ IFR+AP P+FPGGP GRK+VVSTN+AETSLTIDGIVYVVDPGFSKQKV
Sbjct:  251 LKVVVMSATLDAKKFQDYFDKAPLICIPGRTFPVEIFYTPEPERDYVEAAIRTAVQIHVCEDEGDILMFLTGQEEIETACRQIQAEAD-SLDQSKYGPLAVYPLYSTLPPQQQQWIFRDAPKPRFPGGPKGRKIVVSTNIAETSLTIDGIVYVVDPGFSKQKV 412          
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: RNA (helicase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AH23_GONPJ)

HSP 1 Score: 248 bits (633), Expect = 2.300e-75
Identity = 125/164 (76.22%), Postives = 141/164 (85.98%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKE-GELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            + +VVMSATLDA KFQKYF+DAPLL +PGRTFPVEI+YTP PERDY+EAA RTV+QIH CEDPGD+LLFLTGE EIEDACR +RAEVE+    +KE  EL   PLYS+LPPAAQQKIF  AP  +FPGGP GRK ++STN+AETSLTIDGIVYVVDPGFSKQKV
Sbjct:  222 LTLVVMSATLDAVKFQKYFNDAPLLSIPGRTFPVEIYYTPEPERDYLEAATRTVLQIHTCEDPGDILLFLTGEEEIEDACRRLRAEVEQLMAASKEIPELRTVPLYSTLPPAAQQKIFDAAPPARFPGGPPGRKCIISTNIAETSLTIDGIVYVVDPGFSKQKV 385          
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: RNA (helicase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5R1_9STRA)

HSP 1 Score: 246 bits (627), Expect = 9.600e-75
Identity = 124/163 (76.07%), Postives = 140/163 (85.89%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            ++VV+MSATLDAEKFQKYFD APL+KVPGRT PVE+FYTP PERDYVEA+VRTVVQIH+ E PGDVLLFLTGE EIEDACR IRAE +   D    G + VYPLY+SLPP  QQ IF++APGP+ PGG  GRKV+VSTN+AETSLTIDGIV+VVDPGFSKQKV
Sbjct:  204 LKVVIMSATLDAEKFQKYFDGAPLMKVPGRTHPVEVFYTPEPERDYVEASVRTVVQIHQYESPGDVLLFLTGEEEIEDACRRIRAEADALGDSV--GPMEVYPLYASLPPRQQQDIFKDAPGPRKPGGTPGRKVIVSTNIAETSLTIDGIVFVVDPGFSKQKV 364          
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Match: RNA (helicase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EG65_9FUNG)

HSP 1 Score: 245 bits (626), Expect = 2.380e-74
Identity = 121/165 (73.33%), Postives = 143/165 (86.67%), Query Frame = 0
Query:    1 MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEK--SQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKV 163
            ++V+VMSATLDA KFQKYF+DAPLL VPGRTFPVEI+YTP PERDY+EAA+RTV+QIH CE+PGD+L+FLTGE EIEDACR IRAEV+      P + G++   PLYSSLPPA QQ+IF +AP P+ PGGP GRK+V+STN+AETSLTIDGIVYV+DPGFSKQKV
Sbjct:  233 LKVIVMSATLDAGKFQKYFNDAPLLVVPGRTFPVEIYYTPEPERDYLEAAIRTVLQIHTCEEPGDILVFLTGEEEIEDACRKIRAEVDGLIRASPNQVGDVKAVPLYSSLPPAQQQRIFDQAPPPRTPGGPPGRKIVLSTNLAETSLTIDGIVYVIDPGFSKQKV 397          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9349.17508.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RNA4.490e-10399.39helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Uncharacterized5.680e-10399.39protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
RNA4.900e-7979.14helicase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
RNA4.550e-7776.07helicase n=1 Tax=Fibrocapsa japonica TaxID=94617 R... [more]
Uncharacterized2.620e-7676.69protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Probable9.030e-7677.91pre-mrna-splicing factor atp-dependent rna helicas... [more]
Uncharacterized9.910e-7676.69protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
RNA2.300e-7576.22helicase n=1 Tax=Gonapodya prolifera (strain JEL47... [more]
RNA9.600e-7576.07helicase n=1 Tax=Spumella elongata TaxID=89044 Rep... [more]
RNA2.380e-7473.33helicase n=1 Tax=Powellomyces hirtus TaxID=109895 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..30
e-value: 1.2E-8
score: 36.4
NoneNo IPR availableGENE3D3.40.50.300coord: 31..163
e-value: 3.8E-46
score: 158.8
NoneNo IPR availablePANTHERPTHR18934:SF217PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATEDcoord: 2..163
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 2..163
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 59..158
e-value: 4.8E-6
score: 26.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9349contigEcto-sp9_F_contig9349:3192..4837 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9349.17508.1mRNA_Ecto-sp9_F_contig9349.17508.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9349 3168..4837 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9349.17508.1 ID=prot_Ecto-sp9_F_contig9349.17508.1|Name=mRNA_Ecto-sp9_F_contig9349.17508.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=163bp
MRVVVMSATLDAEKFQKYFDDAPLLKVPGRTFPVEIFYTPTPERDYVEAA
VRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELA
VYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGI
VYVVDPGFSKQKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase