prot_Ecto-sp9_F_contig9343.17505.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9343.17505.1
Unique Nameprot_Ecto-sp9_F_contig9343.17505.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length401
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9343.17505.1 vs.
Match: PPR_long (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 6.830e-86
Identity = 152/167 (91.02%), Postives = 154/167 (92.22%), Query Frame = 0 
Query:  194 RTGRGGRDISGGRSNSSRESRALVDRVKASAASGSWEEALAHVAEARSSGLKLDGRVHTAAIHAALDGGKARPVLAAIAAMRADGFVPNIPLYNKAISLCGRQGAWEDSVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPDQIA 360
            RTGR         S+SSRESRALVDRVKASAASGSWEEALAHVAE RSSGLKLDGRVHTAAI AALDGGKARPVLA IAAMRADGFVPNI LYNKAISLCGRQGAWED+VFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPDQIA
Sbjct:   13 RTGRXXXXXXXXXSSSSRESRALVDRVKASAASGSWEEALAHVAEVRSSGLKLDGRVHTAAIRAALDGGKARPVLATIAAMRADGFVPNISLYNKAISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPDQIA 179
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BLAST of mRNA_Ecto-sp9_F_contig9343.17505.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J994_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.840e-33
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 0 
Query:  288 KAISLCGRQGAWEDSVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPDQI 359
            +AISLCGRQG WED++FLLRDAQR+SSPGQ RGVDVVT+SAAVAACRDGG+WRQALALMEEMQAAGIKPDQI
Sbjct:    9 QAISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGVDVVTYSAAVAACRDGGQWRQALALMEEMQAAGIKPDQI 80
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BLAST of mRNA_Ecto-sp9_F_contig9343.17505.1 vs.
Match: Uncharacterized (protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BDY1_EMIHU)

HSP 1 Score: 58.9 bits (141), Expect = 1.260e-5
Identity = 50/145 (34.48%), Postives = 73/145 (50.34%), Query Frame = 0 
Query:  216 LVDRVKASAASGSWEEALAHVAEARSSGLKLDGRVHTAAIHAALDGGKARPVLAAIAAMRADGFVPNIPLYNKAISLCGRQGAWEDSVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPDQIA 360
            L D V+ASAAS  WE A+A  A+  +  ++ D + + A + A L+ G    VL+ +AAMRADG +PN      AI    R G  E +   L  AQ       R G     F+  + AC   G+  +A+AL EEM   G+  + ++
Sbjct:  376 LSDAVRASAASREWEAAIALHADICNKPMR-DVQAYNAMLMACLECGAPSHVLSLLAAMRADGLLPNALSLTSAIVAAQRLGRHE-AALALSAAQLPLGDALRLGA----FNGRITACLRDGQPSRAVALFEEMGVRGVPRNSLS 514
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9343.17505.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
PPR_long6.830e-8691.02domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.840e-3388.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.260e-534.48protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 345..396
e-value: 6.8E-6
score: 26.1
coord: 238..295
e-value: 2.5E-4
score: 21.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 324..357
e-value: 4.5E-5
score: 21.4
coord: 360..393
e-value: 2.8E-6
score: 25.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 282..316
score: 6.467
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 322..356
score: 11.038
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 247..281
score: 6.259
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 212..246
score: 5.448
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 357..391
score: 10.819
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 317..399
e-value: 3.2E-20
score: 74.7
coord: 215..316
e-value: 5.1E-11
score: 44.5
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 224..301
coord: 322..396
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..401

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9343contigEcto-sp9_F_contig9343:174..4624 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9343.17505.1mRNA_Ecto-sp9_F_contig9343.17505.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9343 174..4639 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9343.17505.1 ID=prot_Ecto-sp9_F_contig9343.17505.1|Name=mRNA_Ecto-sp9_F_contig9343.17505.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=401bp
MRRPCSFASFVSTTGSSAETTLRHLQWLPQCSPRRGQRIAPSRRRRRMSP
QAARGSAAPAEEPDDAATAAAAAAAAAAAVFRQLEAGLDSDDDDDAMVFG
VKDAYSSTVSTAPSGERDTHAASVPVATVAAPARQDSKRHRRITTTSSSP
ITQRATSAGGSASTKGPGRGAGRRERGGSGAMGVGRGKGGGGGRTGRGGR
DISGGRSNSSRESRALVDRVKASAASGSWEEALAHVAEARSSGLKLDGRV
HTAAIHAALDGGKARPVLAAIAAMRADGFVPNIPLYNKAISLCGRQGAWE
DSVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQ
AAGIKPDQIAYGTAVSACAMAGQWEKAVALLADMRRSELRPDVVAYRYSA
K
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf