prot_Ecto-sp9_F_contig9342.17502.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9342.17502.1
Unique Nameprot_Ecto-sp9_F_contig9342.17502.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length72
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9342.17502.1 vs.
Match: Bromodomain-containing (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.220e-30
Identity = 65/71 (91.55%), Postives = 65/71 (91.55%), Query Frame = 0 
Query:    2 QENTDFWHAADSLALLTESLYESWVLQPERRRDAESMKEAGLGVVDAPTPAASATAAATAPGVTTPATGAQ 72
            QENTDFWHAADSLALLTESLYESWVLQPERRRDAESMKEAGLGVVDAPTPAASATA    PG TTPA GAQ
Sbjct: 1163 QENTDFWHAADSLALLTESLYESWVLQPERRRDAESMKEAGLGVVDAPTPAASATAXXXXPGATTPAMGAQ 1233
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BLAST of mRNA_Ecto-sp9_F_contig9342.17502.1 vs.
Match: Bromo (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ2_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.930e-24
Identity = 59/71 (83.10%), Postives = 60/71 (84.51%), Query Frame = 0 
Query:    3 ENTDFWHAADSLALLTESLYESWVLQPERRRDAESMKEAGLGVVDAPTPAASATAAATAPG-VTTPATGAQ 72
            ENTD+WHAADSLALLTESLYESWVLQPERRRDAESMKEAGLGVVDAPTPAA           VTTPATGAQ
Sbjct:  169 ENTDYWHAADSLALLTESLYESWVLQPERRRDAESMKEAGLGVVDAPTPAAXXXXXXXXXXXVTTPATGAQ 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9342.17502.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Bromodomain-containing3.220e-3091.55protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Bromo4.930e-2483.10domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9342contigEcto-sp9_F_contig9342:125..340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9342.17502.1mRNA_Ecto-sp9_F_contig9342.17502.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9342 125..340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9342.17502.1 ID=prot_Ecto-sp9_F_contig9342.17502.1|Name=mRNA_Ecto-sp9_F_contig9342.17502.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=72bp
MQENTDFWHAADSLALLTESLYESWVLQPERRRDAESMKEAGLGVVDAPT
PAASATAAATAPGVTTPATGAQ
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