prot_Ecto-sp9_F_contig9304.17468.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9304.17468.1
Unique Nameprot_Ecto-sp9_F_contig9304.17468.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length261
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9304.17468.1 vs.
Match: RING-type (domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M0_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 2.680e-28
Identity = 162/238 (68.07%), Postives = 169/238 (71.01%), Query Frame = 0 
Query:   23 GYDSEFDMDTPSSPLSEETILRLQSLSPVVTDLSGTLSQWEFDMYATTVLASSEKSQTAALQDMLDLEREQEXXXXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKYDDCIICLDEMTLFADQTTLSYGHVFHRVCAQTLFLKYSSQCPSCRKEVA 260
            GYDSEFDMDTP+  LS+E ILRLQSLSPVVTDL+G+L+QWEFDMY TTVL S           MLDL                       XXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXX    RKKYDDC ICLD +T F  +TTL  GHVFH VCA TL L YSSQCPSCRKEVA
Sbjct:  233 GYDSEFDMDTPTPTLSQEQILRLQSLSPVVTDLTGSLTQWEFDMYTTTVLPSXXXXXXXXXXYMLDL-----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAGFKDGRVKQKKXXXXXXXXXTSFKRKKYDDCAICLDSITPFEGRTTLPCGHVFHWVCAHTLLLNYSSQCPSCRKEVA 447
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BLAST of mRNA_Ecto-sp9_F_contig9304.17468.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.450e-24
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:   23 GYDSEFDMDTPSSPLSEETILRLQSLSPVVTDLSGTLSQWEFDMYATTVLASSEKSQTAALQDMLDLER 91
            GYDSEFDMDTP+  LS+E ILRLQSLSPVVTDL+G+LSQWEFDMY TTVL SSE+ +TAALQ MLDLER
Sbjct:  232 GYDSEFDMDTPTPTLSQEQILRLQSLSPVVTDLTGSLSQWEFDMYTTTVLPSSEEDETAALQYMLDLER 300
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9304.17468.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
RING-type2.680e-2868.07domain-containing protein n=2 Tax=Ectocarpus silic... [more]
Uncharacterized1.450e-2481.16protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 79..174
NoneNo IPR availableCOILSCoilCoilcoord: 3..23
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 94..259
NoneNo IPR availablePANTHERPTHR22765:SF187TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1coord: 94..259
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 213..259
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 212..256
e-value: 6.0E-8
score: 32.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 214..256
score: 9.598
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 187..260
e-value: 7.2E-12
score: 46.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9304contigEcto-sp9_F_contig9304:2408..3998 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9304.17468.1mRNA_Ecto-sp9_F_contig9304.17468.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9304 1781..3998 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9304.17468.1 ID=prot_Ecto-sp9_F_contig9304.17468.1|Name=mRNA_Ecto-sp9_F_contig9304.17468.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=261bp
MRARETERRAREAERQMRDERDGYDSEFDMDTPSSPLSEETILRLQSLSP
VVTDLSGTLSQWEFDMYATTVLASSEKSQTAALQDMLDLEREQEEEEEKK
KKEEKSGEEKEEEEDEEEQEDEDKEDEEEEEEEKEEEEEEEEEEEEKEEE
EAKEDEEAKEEEEAKEEEEAKEEEGGGGGEEDAGFQDGRAKQKKKGKGKR
KRKASFKRKKYDDCIICLDEMTLFADQTTLSYGHVFHRVCAQTLFLKYSS
QCPSCRKEVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD