prot_Ecto-sp9_F_contig930.17461.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig930.17461.1
Unique Nameprot_Ecto-sp9_F_contig930.17461.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length342
Homology
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BLAST of mRNA_Ecto-sp9_F_contig930.17461.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU0_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 2.280e-64
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0 
Query:   63 MASSALPIAVAVEGKPTGTGVVCSIADEDDKAPLLVLHHHTNGRAWSRGDGGTWEGWGLQDPLERWSGVAVQGDRVVGLKLYLCKLMGFIPQELGSLSCLLYLDLGRNQL 172
            MASSALPIAVAVEGKPTG+GVVCSIADEDDKAPLLVLHHHTNGRAW RGDGG WEGWGLQDPLERWSGVAV+G RVVGLKLYLCKLMGFIP ELGSLSCLLYLDLGRNQL
Sbjct:    1 MASSALPIAVAVEGKPTGSGVVCSIADEDDKAPLLVLHHHTNGRAWLRGDGGPWEGWGLQDPLERWSGVAVKGGRVVGLKLYLCKLMGFIPHELGSLSCLLYLDLGRNQL 110
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BLAST of mRNA_Ecto-sp9_F_contig930.17461.1 vs.
Match: Leucine (rich repeat-containing protein n=2 Tax=Bizionia TaxID=283785 RepID=A0A1I5A0G6_9FLAO)

HSP 1 Score: 58.2 bits (139), Expect = 3.980e-6
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 0 
Query:   91 DDKAPLLVLHHHTNGRAWSRGDGGTWEGWGLQDPLERWSGVAVQGDRVVGLKLYLCKLMGFIPQELGSLSCLLYLDLG 168
            ++KA L+ L++ TNG  W+     TW+   L  P+E W GV ++ ++VV + L    L G +PQE+G L  L YL+ G
Sbjct:   24 NEKAALVALYNSTNGSQWTH----TWD---LSAPVENWYGVTIKNNKVVEISLEFNNLQGILPQEIGDLVNLKYLNFG 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig930.17461.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.280e-6494.55protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Leucine3.980e-638.46rich repeat-containing protein n=2 Tax=Bizionia Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 255..280
e-value: 35.0
score: 8.8
coord: 159..182
e-value: 25.0
score: 10.0
coord: 207..231
e-value: 5.8
score: 15.2
coord: 183..206
e-value: 64.0
score: 6.7
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 210..230
e-value: 0.35
score: 11.6
coord: 185..205
e-value: 0.83
score: 10.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 88..334
e-value: 2.9E-55
score: 189.5
NoneNo IPR availablePANTHERPTHR27006:SF119LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEINcoord: 198..283
NoneNo IPR availablePANTHERPTHR27006:SF119LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEINcoord: 248..330
coord: 175..258
coord: 148..229
NoneNo IPR availablePANTHERPTHR27006FAMILY NOT NAMEDcoord: 248..330
coord: 148..229
NoneNo IPR availablePANTHERPTHR27006FAMILY NOT NAMEDcoord: 198..283
NoneNo IPR availablePANTHERPTHR27006FAMILY NOT NAMEDcoord: 175..258
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 141..324

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig930contigEcto-sp9_F_contig930:3453..12953 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig930.17461.1mRNA_Ecto-sp9_F_contig930.17461.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig930 3453..13656 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig930.17461.1 ID=prot_Ecto-sp9_F_contig930.17461.1|Name=mRNA_Ecto-sp9_F_contig930.17461.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=342bp
MSGCVEVLENGWQGTWYFTPAQQHKRTITRAEARTQGQSPSAIAKKSGGL
RGIALHCWGATRMASSALPIAVAVEGKPTGTGVVCSIADEDDKAPLLVLH
HHTNGRAWSRGDGGTWEGWGLQDPLERWSGVAVQGDRVVGLKLYLCKLMG
FIPQELGSLSCLLYLDLGRNQLFASIPPEFGALKQLRTLDLYHNQLSGPI
PEELGALSELRELNLGSNQLTGSIPAALGRLGSLQVLRLTDNMLSGAIPC
ELGQLINLKVLKLNGNELAAGEIPKELGSLSGLVSLWLNKNNLSGNIPQA
LGALHLLENLWLKDNKELKYIPMVTKMQLRRKMKGECDIRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf