prot_Ecto-sp9_F_contig9297.17453.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9297.17453.1
Unique Nameprot_Ecto-sp9_F_contig9297.17453.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length178
Homology
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: RING-Gid-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT28_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 4.100e-118
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0
Query:    1 MMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 177
            MMYARERVMPVAG HMRELQELMGSLLWSGNLEASPYSHLLS ELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTL+NPPVLLKCGH VLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL
Sbjct:   77 MMYARERVMPVAGRHMRELQELMGSLLWSGNLEASPYSHLLSLELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHVVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 253          
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M5_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 6.070e-116
Identity = 173/177 (97.74%), Postives = 176/177 (99.44%), Query Frame = 0
Query:    1 MMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 177
            MMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASR+SGLSRESILSVAFRAGILALPTLVKMAAVVRGSN EWNGM+ELPLEVPLPPGLRYHSMFSCPVSREPSTL+NPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL
Sbjct:  303 MMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRISGLSRESILSVAFRAGILALPTLVKMAAVVRGSNLEWNGMRELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 479          
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2J0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 4.640e-46
Identity = 84/176 (47.73%), Postives = 114/176 (64.77%), Query Frame = 0
Query:    3 YARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQE-LPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 177
            +A+ER    A GHMRE+Q+ MG+LLW+G L+ SPY  L S+E W +  ++         GL   S L VAF AG+  +P L KM AVV  S+ +W  + E LP EV LPP   +HS+FSCPV+R+ +  +NPPV+LKCGH +LRSS+++L R G R KCPTCP +   +E  PL +
Sbjct:  212 FAQERFPDFADGHMREIQQCMGALLWAGRLDKSPYRTLASEEAWQKSVQAFLEVGCEAEGLPMHSHLLVAFVAGLQFVPILAKMLAVVV-SDGDWTKLGERLPAEVSLPPEFTFHSLFSCPVTRDEADRDNPPVVLKCGHVILRSSLAKLTRAGGRIKCPTCPRDMRADEVQPLLI 386          
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SPV1_LOTJA)

HSP 1 Score: 155 bits (391), Expect = 1.160e-44
Identity = 75/165 (45.45%), Postives = 108/165 (65.45%), Query Frame = 0
Query:    3 YARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGSR-FKCPTCPVE 166
            YAR  + P A  H+ ++Q+LMGSLLW+G L++SPY  LL    W R+ E +      + G S  S LSV   AG+ ALP L+K   V+ G  QEW  M +LP+ V L   L++HS+F CPVS+E +T +NPP+L+ CGH + + S+S++++NGS+ FKCP CP +
Sbjct:   18 YARTYLSPFASSHIADIQKLMGSLLWTGKLDSSPYHALLPPSNWDRLAEELKRQFCNLLGQSYNSPLSVTISAGVQALPPLLKFMNVMVGKKQEWQTMNQLPVPVELDSELQFHSIFVCPVSKEQATEDNPPMLMSCGHVLCKQSISKMSKNGSKLFKCPYCPFD 182          
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: Uncharacterized (protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JTR3_9GLOM)

HSP 1 Score: 158 bits (399), Expect = 9.830e-44
Identity = 69/174 (39.66%), Postives = 116/174 (66.67%), Query Frame = 0
Query:    1 MMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGS-RFKCPTCPVEQMENETM 173
            +MYA+         HM+E++ LMG+L++   L +SPY+  LS++ WT ++++   D   + G++ +S L ++   G  ALPT++KMA +++    EW+   ELP+E+PL   +RYHS+F+CPVS+E ST  NPP+++ CGH + + S+++L+  G+ RFKCP CP+E M N+ +
Sbjct:  205 LMYAKTNFEYFQARHMKEIKRLMGALIYINRLSSSPYADFLSKDAWTDIQQTFTRDFCNLLGMACDSPLYISVTVGATALPTIIKMATIMKEKKNEWSQQNELPVEIPLTDDMRYHSIFACPVSKEQSTEENPPMMMPCGHVICKESLTKLSSKGNGRFKCPYCPIESMVNQAV 378          
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: Hypothetical (protein n=3 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K265_SPIIN)

HSP 1 Score: 157 bits (398), Expect = 1.570e-43
Identity = 79/165 (47.88%), Postives = 107/165 (64.85%), Query Frame = 0
Query:    3 YARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGSR-FKCPTCPVE 166
            YAR  + P A  HM E+Q+LM  LLW+  L+ SPY+  LS  LW    E +     R+ G S ES L+VA  AG+ ALPTL+K+A V+    QEW  M++LP+ V L    ++HS+F CPVSREP++  NPP+L+ CGHA+ + SV +L++  SR FKCP CP E
Sbjct:  213 YARSHLSPFASLHMAEVQKLMACLLWADRLDQSPYAEFLSPTLWDSTAEELTRQFCRLLGQSCESPLAVAVAAGVQALPTLLKLAGVMASKKQEWQAMKQLPVAVDLGKEFQFHSIFVCPVSREPASEENPPMLMPCGHALCKQSVVKLSKGSSRAFKCPYCPSE 377          
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: Uncharacterized (protein n=6 Tax=Maleae TaxID=721813 RepID=A0A540NTC5_MALBA)

HSP 1 Score: 157 bits (397), Expect = 2.070e-43
Identity = 76/176 (43.18%), Postives = 113/176 (64.20%), Query Frame = 0
Query:    1 MMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGSR-FKCPTCPVEQMENETMPL 175
            + Y++  + P A  +M E+Q+LMGSLLW+G LE SPYSHLLS  +W +V   +      + G S +S LS+   AGI  LP L+K   V+ G  QEW  M++LP+ V L    ++HS+F CPVS+E ST  NPP+L+ CGH + + S++++++NG++ FKCP CP +    +  PL
Sbjct:  208 LQYSKTCLAPFASNYMAEIQKLMGSLLWTGRLEYSPYSHLLSPAIWDKVTGELTRQFCNLLGQSYKSPLSLTLAAGIQGLPPLLKFMNVMAGKRQEWQSMKQLPVPVELNHEFQFHSIFVCPVSKEQSTEENPPMLMSCGHVLCKQSITKMSKNGTKAFKCPYCPSDVDSAQCRPL 383          
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: Uncharacterized (protein n=7 Tax=Prunus TaxID=3754 RepID=M5VYM6_PRUPE)

HSP 1 Score: 157 bits (397), Expect = 2.120e-43
Identity = 78/176 (44.32%), Postives = 110/176 (62.50%), Query Frame = 0
Query:    1 MMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGSR-FKCPTCPVEQMENETMPL 175
            + YAR  + P A  HM E+Q+LM  LLW+G L+ SPYSHLLS   W +V   +      + G S ES LSV   AGI  LP L+K   V+ G  QEW  M++LP+ V L    ++HS+F CPVS+E ST  NPP+L+ CGH + + S++++++NG++ FKCP CP +    +  PL
Sbjct:  209 LQYARTYLAPFASDHMAEIQKLMVCLLWTGRLDRSPYSHLLSPANWDKVTGELTRQFCNLLGQSYESPLSVTIAAGIQGLPPLLKFMNVMAGKRQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMSCGHVLCKQSITKMSKNGTKSFKCPYCPSDVNSAQCRPL 384          
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: Ubiquitin-protein (ligase RMD5 n=8 Tax=Glomeraceae TaxID=36751 RepID=A0A015LDZ0_RHIIW)

HSP 1 Score: 156 bits (394), Expect = 2.850e-43
Identity = 72/173 (41.62%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    1 MMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETM 173
            ++YA+++       H+ +++ LM +L +S  L  SPY  LLS +LW  ++     D   + G+S ES L ++   G  ALPT++KMA +++    EW+   ELP+EVPLP  +RYHS+F+CPVS+E ST  NPP++L CGH +   S+++L+R  SRFKCP CP E + N+ +
Sbjct:  177 LVYAKKKFPLFHSRHIFDIKRLMCALAFSNRLSTSPYKDLLSPDLWIELQNKFMRDFCNLLGMSSESPLYISVTVGATALPTILKMATIMKEKKNEWSQQDELPVEVPLPDYMRYHSIFACPVSKEQSTEKNPPMMLPCGHVICHESLNKLSRGNSRFKCPYCPHESIANQAL 349          
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Match: protein (RMD5 homolog A-like n=26 Tax=Malvoideae TaxID=214907 RepID=A0A1U8NPS8_GOSHI)

HSP 1 Score: 157 bits (396), Expect = 2.920e-43
Identity = 76/165 (46.06%), Postives = 107/165 (64.85%), Query Frame = 0
Query:    3 YARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSRLARNGSR-FKCPTCPVE 166
            YAR   +P AG HM E+Q+LMG LL+S  L  SPY+HLLS   W  V E +      + G S +S LSV   AG+  LP L+K   V+ G  QEW  M++LP+ V L    ++HS+F CPVS+E ST +NPP+L+ CGH + + S++++++NGS+ FKCP CP +
Sbjct:  210 YARTNFVPFAGNHMAEIQKLMGCLLYSDRLSESPYAHLLSPTNWDIVAEELTRQFCNLLGQSYQSPLSVTIAAGVQGLPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQSTEDNPPMLMSCGHVLCKQSINKMSKNGSKTFKCPYCPSD 374          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9297.17453.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RING-Gid-type4.100e-11897.74domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized6.070e-11697.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical4.640e-4647.73protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Uncharacterized1.160e-4445.45protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=... [more]
Uncharacterized9.830e-4439.66protein n=1 Tax=Diversispora epigaea TaxID=1348612... [more]
Hypothetical1.570e-4347.88protein n=3 Tax=Spirodela intermedia TaxID=51605 R... [more]
Uncharacterized2.070e-4343.18protein n=6 Tax=Maleae TaxID=721813 RepID=A0A540NT... [more]
Uncharacterized2.120e-4344.32protein n=7 Tax=Prunus TaxID=3754 RepID=M5VYM6_PRU... [more]
Ubiquitin-protein2.850e-4341.62ligase RMD5 n=8 Tax=Glomeraceae TaxID=36751 RepID=... [more]
protein2.920e-4346.06RMD5 homolog A-like n=26 Tax=Malvoideae TaxID=2149... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013144CRA domainSMARTSM00757toby_final6coord: 3..89
e-value: 7.5E-9
score: 45.4
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 121..161
e-value: 8.7E-6
score: 25.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 114..175
e-value: 1.5E-6
score: 29.3
IPR024964CTLH/CRA C-terminal to LisH motif domainPFAMPF10607CLTHcoord: 2..83
e-value: 5.1E-11
score: 42.7
IPR027711Rmd5PANTHERPTHR12170:SF3SPORULATION PROTEIN RMD5coord: 2..172
NoneNo IPR availablePANTHERPTHR12170MACROPHAGE ERYTHROBLAST ATTACHER-RELATEDcoord: 2..172
NoneNo IPR availablePROSITEPS51867ZF_RING_GIDcoord: 121..163
score: 10.632
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 116..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9297contigEcto-sp9_F_contig9297:2017..4158 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9297.17453.1mRNA_Ecto-sp9_F_contig9297.17453.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9297 632..5181 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9297.17453.1 ID=prot_Ecto-sp9_F_contig9297.17453.1|Name=mRNA_Ecto-sp9_F_contig9297.17453.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=178bp
MMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVK
ESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGM
QELPLEVPLPPGLRYHSMFSCPVSREPSTLNNPPVLLKCGHAVLRSSVSR
LARNGSRFKCPTCPVEQMENETMPLTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013144CRA_dom
IPR027370Znf-RING_LisH
IPR013083Znf_RING/FYVE/PHD
IPR024964CTLH/CRA
IPR027711Rmd5