prot_Ecto-sp9_F_contig9293.17451.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9293.17451.1
Unique Name	prot_Ecto-sp9_F_contig9293.17451.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	92

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9293.17451.1 vs.
Match: Similar (to doublecortin and CaM kinase-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ48_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.260e-34
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 0

Query:    7 RTQELVTLAVVLIAAVVVWRWVSRRRYHWKQQESHDTADARSVDEDDGLESGGDNMVNPEGFDIRPIESAGADFLSTGGDI 87
            R +ELVTLAVV +AAVVVWRWVSRRRYHWKQQE HDTADARSVDEDD LES GD++VNPEG DI  + SAGADFLST GDI
Sbjct:   42 RCRELVTLAVVFVAAVVVWRWVSRRRYHWKQQERHDTADARSVDEDDDLESRGDDVVNPEGSDINSVASAGADFLSTRGDI 122

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BLAST of mRNA_Ecto-sp9_F_contig9293.17451.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G381_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.900e-22
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 0

Query:    2 DLTGSRTQELVTLAVVLIAAVVVWRWVSRRRYHWKQQESHDTADARSVDEDDGLESGGDN-MVNPEGFDIRPIESAGADFLSTGGD-IDSRR 91
            D+ GSRTQELVTLAVVL AAVVVWRWVSR+ + WK+Q+  +TADARS DE   LE+G D+  VNP G DI P      DFLS   D ++SRR
Sbjct:   61 DIAGSRTQELVTLAVVLAAAVVVWRWVSRKVHQWKEQDRRNTADARSDDEGSDLEAGSDDDRVNPAGPDIEP---GATDFLSASADDLESRR 149

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BLAST of mRNA_Ecto-sp9_F_contig9293.17451.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.190e-17
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0

Query:   40 SHDTADARSVDEDDGLESGGDNMVNPEGFDIRPIESAGADFLSTGGD 86
            SHDTADARS DEDD LESGGD+MVNP G DIR I+SAGADFLSTGGD
Sbjct:    7 SHDTADARSADEDDNLESGGDDMVNPAGSDIRFIDSAGADFLSTGGD 53

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9293.17451.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.920e-10
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 0

Query:    2 DLTGSRTQELVTLAVVLIAAVVVWRWVSRRRYHWKQQESHDTADARSVDEDDGLESGGDN-MVNP 65
            DL  SR QELVTLAVVL AAVV  RWVS +   WK+Q+  +TADAR  DE   LE+GGD+  VNP
Sbjct:   12 DLLISR-QELVTLAVVLAAAVVFCRWVSGKVQQWKEQDRRNTADARFDDEGSDLEAGGDDDSVNP 75

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9293.17451.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9293.17451.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
Similar	1.260e-34	81.48	to doublecortin and CaM kinase-like 3 n=1 Tax=Ecto...	[more]
N/a	4.900e-22	60.87	n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7...	[more]
Uncharacterized	1.190e-17	85.11	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Protein	3.920e-10	61.54	kinase domain-containing protein n=1 Tax=Ectocarpu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..91
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..28
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..91
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 10..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9293	contig	Ecto-sp9_F_contig9293:1428..2051 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9293.17451.1	mRNA_Ecto-sp9_F_contig9293.17451.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9293 1428..2712 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9293.17451.1 ID=prot_Ecto-sp9_F_contig9293.17451.1|Name=mRNA_Ecto-sp9_F_contig9293.17451.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp
MDLTGSRTQELVTLAVVLIAAVVVWRWVSRRRYHWKQQESHDTADARSVD
EDDGLESGGDNMVNPEGFDIRPIESAGADFLSTGGDIDSRR*