prot_Ecto-sp9_F_contig9287.17446.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9287.17446.1
Unique Nameprot_Ecto-sp9_F_contig9287.17446.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length299
Homology
BLAST of mRNA_Ecto-sp9_F_contig9287.17446.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM64_ECTSI)

HSP 1 Score: 574 bits (1480), Expect = 7.100e-196
Identity = 293/304 (96.38%), Postives = 296/304 (97.37%), Query Frame = 0
Query:    1 QVFFAFLLAFIGFWWFFFGHFRLLYHAMRYRKNGLYLLHQLETTVLFFIAVYQIFSAMGNMTQLLAPLAPGSAVPVRQNPMAGVILLGIASGLWFVVLMFCFYFIRKVHYYKNLPLSIERDIYRKEFSAIHPEPKKKCSTMITDLFREKLDKAHPPTKCGMFQGKDLWLQGMITLETLYVEYRADVHVFDHLVHERFSYQDVLAIKTSGRSNITFQLVHPTKRHLEDLEMEFDFSDKEVRDKLYKVATKLWRRVGRNSDLLTRERADKLKKMRKVGRAADIDDENPDLVEV-----RRETRKRM 299
            QVFFAFLLAFIGFWWFFFGHFRLLYHAMRYRKNGLYLLHQLETTVLFFIAVYQIFSAMGNMTQLLAPLAPGSAVPVRQNPMAGVILLGIASGLWFVVLMFCFYFIRKVHYYKNLPLSIERDIYRKEFSAIHPEPKKKCSTMITDLFREKLDKAHPPTKCGM QGKDLWLQGMITLETLYVEYRADVHVFDHLVHERFSYQDVLAIKTSG+SNITFQLVHPTKRHLEDLEMEFDFSDKEVRDKLYKVATKLWRRVGRNSDLLTRERADKLKKMRKVGRAADIDDENPDLVE      R ETR+R+
Sbjct:  169 QVFFAFLLAFIGFWWFFFGHFRLLYHAMRYRKNGLYLLHQLETTVLFFIAVYQIFSAMGNMTQLLAPLAPGSAVPVRQNPMAGVILLGIASGLWFVVLMFCFYFIRKVHYYKNLPLSIERDIYRKEFSAIHPEPKKKCSTMITDLFREKLDKAHPPTKCGMLQGKDLWLQGMITLETLYVEYRADVHVFDHLVHERFSYQDVLAIKTSGKSNITFQLVHPTKRHLEDLEMEFDFSDKEVRDKLYKVATKLWRRVGRNSDLLTRERADKLKKMRKVGRAADIDDENPDLVEAFNKARRMETRERL 472          
BLAST of mRNA_Ecto-sp9_F_contig9287.17446.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW70_9STRA)

HSP 1 Score: 149 bits (375), Expect = 9.700e-37
Identity = 79/215 (36.74%), Postives = 130/215 (60.47%), Query Frame = 0
Query:   58 MGNMTQLLAPLAPGSAVPVRQNPMAGVILLGIASGLWFVVLMFCFYFIRKVHYYKNLPLSIERDIYRKEFSAIHPEPKKKCSTMITDLFREKLDKAHPPTKCGMF---------QGKDLWLQGMITLETLYVEYRADVHVFDHLVHERFSYQDVLAIKTSGRSNITFQLVHPTKRHLEDLEMEFDFSDKEVRDKLYKVATKLWRRVGRNSDLLTR 263
            +G + Q+++PLAPGS +PV+QNPM    +L +   LWF+ +M C + +RK +Y+K++ L+ E  IY+KE  +   +  K    +I   F +K D    P +CGM           GK +W+QG+++ +T+Y +++AD+ +FDHL+ ERFSY DV+ I+   ++ +   +    +   +  E+ FD + K+VR  L+  A KLW R+GRNSD+L R
Sbjct:    2 VGQLVQIISPLAPGSPLPVKQNPMYASAMLVLTMALWFMTMMACLWLVRKTYYFKHMTLNQEFLIYKKEQES-PMDTVKTWGDIIQGWFAKKEDPPLDPVRCGMLCGADKRFGGDGKGVWVQGVLSFDTIYFDFQADLTIFDHLIKERFSYYDVVEIRKFQQTCLLITVATGPEED-DKRELLFDVAYKKVRTDLFAGARKLWGRIGRNSDILVR 214          
BLAST of mRNA_Ecto-sp9_F_contig9287.17446.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB7_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.180e-32
Identity = 68/139 (48.92%), Postives = 102/139 (73.38%), Query Frame = 0
Query:  161 MFQGKDLWLQGMITLETLYVEYRADVHVFDHLVHERFSYQDVLAIKTSGRSNITFQLVHPTKRHLEDLEMEFDFSDKEVRDKLYKVATKLWRRVGRNSDLLTRERADKLKKMRKVGRAADIDDENPDLVEVRRETRKRM 299
            M QG+DLWLQG ITLE++++E++ADV VFDHLV ER  YQ+VL I+    + I F++V+P+++ L+D+E+ FD++D+++R   YK A KLWRRVGRN DL+ + R +K+KKMR+    +D+D         R+ETR+R+
Sbjct:    1 MLQGRDLWLQGQITLESVFLEFKADVTVFDHLVWERVHYQEVLEIRKYSETGILFRVVNPSRKDLDDVELIFDYNDRKLRAAQYKAARKLWRRVGRNMDLMNKLRLEKMKKMRRPVDLSDVDQVEAFAKARRKETRERL 139          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9287.17446.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Cyclic7.100e-19696.38nucleotide-binding domain-containing protein n=1 T... [more]
Hypothetical9.700e-3736.74protein (Fragment) n=2 Tax=Fibrocapsa japonica Tax... [more]
Uncharacterized1.180e-3248.92protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007273SCAMPPFAMPF04144SCAMPcoord: 2..112
e-value: 1.4E-10
score: 41.8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 70..80
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..44
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 106..299
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..105
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..69
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availableTMHMMTMhelixcoord: 45..67
NoneNo IPR availableTMHMMTMhelixcoord: 5..24
NoneNo IPR availableTMHMMTMhelixcoord: 82..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9287contigEcto-sp9_F_contig9287:279..4593 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9287.17446.1mRNA_Ecto-sp9_F_contig9287.17446.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9287 279..4593 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9287.17446.1 ID=prot_Ecto-sp9_F_contig9287.17446.1|Name=mRNA_Ecto-sp9_F_contig9287.17446.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=299bp
QVFFAFLLAFIGFWWFFFGHFRLLYHAMRYRKNGLYLLHQLETTVLFFIA
VYQIFSAMGNMTQLLAPLAPGSAVPVRQNPMAGVILLGIASGLWFVVLMF
CFYFIRKVHYYKNLPLSIERDIYRKEFSAIHPEPKKKCSTMITDLFREKL
DKAHPPTKCGMFQGKDLWLQGMITLETLYVEYRADVHVFDHLVHERFSYQ
DVLAIKTSGRSNITFQLVHPTKRHLEDLEMEFDFSDKEVRDKLYKVATKL
WRRVGRNSDLLTRERADKLKKMRKVGRAADIDDENPDLVEVRRETRKRM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007273SCAMP