prot_Ecto-sp9_F_contig928.17441.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig928.17441.1
Unique Nameprot_Ecto-sp9_F_contig928.17441.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length114
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig928.17441.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T9_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 1.660e-65
Identity = 106/114 (92.98%), Postives = 112/114 (98.25%), Query Frame = 0 
Query:    1 VLCIVDVQVQKYVIDDDRKIKRRRDAVTLPKQVCKKTLSLRMDAWKGIQAVSLADTMTEHEKSILGKSGGGLLEEARRDGSLFMALGLGQYRATNTTGFVTNGYRFHDRHMTFV 114
            VLC+V+VQVQKYVIDDDRKIKRRRDAVTLPK+VCKKTLSLRMDAWKGIQAVSLADTMTE+E+SILGKSGGGLLEE RRDGSLFMALGLG+YRATNTTGFVTNG RFHDRHMTFV
Sbjct:   93 VLCMVNVQVQKYVIDDDRKIKRRRDAVTLPKEVCKKTLSLRMDAWKGIQAVSLADTMTEYEESILGKSGGGLLEEGRRDGSLFMALGLGRYRATNTTGFVTNGCRFHDRHMTFV 206
[Close]
BLAST of mRNA_Ecto-sp9_F_contig928.17441.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 2.370e-62
Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 0 
Query:    1 VLCIVDVQVQKYVIDDDRKIKRRRDAVTLPKQVCKKTLSLRMDAWKGIQAVSLADTMTEHEKSILGKSGGGLLEEARRDGSLFMALGLGQYRATNTTGFVTNGYRFHDRHMTFV 114
            VLC+V+VQVQKYVIDDDRKIKRRRDAVTLPK+VCKKTLSLRMDAWKGIQAVSLADTMTE+E+SILGKSGGGLLEEARRDGSLFMALGL +YRATNTTGFVTNGYRFHDRHMTFV
Sbjct:  862 VLCMVNVQVQKYVIDDDRKIKRRRDAVTLPKEVCKKTLSLRMDAWKGIQAVSLADTMTEYEESILGKSGGGLLEEARRDGSLFMALGLDRYRATNTTGFVTNGYRFHDRHMTFV 975
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig928.17441.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.660e-6592.98protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
PHD-type2.370e-6293.86domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig928contigEcto-sp9_F_contig928:22879..23220 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig928.17441.1mRNA_Ecto-sp9_F_contig928.17441.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig928 22879..23221 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig928.17441.1 ID=prot_Ecto-sp9_F_contig928.17441.1|Name=mRNA_Ecto-sp9_F_contig928.17441.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=114bp
VLCIVDVQVQKYVIDDDRKIKRRRDAVTLPKQVCKKTLSLRMDAWKGIQA
VSLADTMTEHEKSILGKSGGGLLEEARRDGSLFMALGLGQYRATNTTGFV
TNGYRFHDRHMTFV
back to top