prot_Ecto-sp9_F_contig9140.17334.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9140.17334.1
Unique Nameprot_Ecto-sp9_F_contig9140.17334.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length180
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9140.17334.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW7_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 9.740e-104
Identity = 166/180 (92.22%), Postives = 171/180 (95.00%), Query Frame = 0 
Query:    1 MKAKAVLLSLGTMLLFSGLPACMGKRSAKDWSKMDLNELEKQWEDGDEEEELKTEEQAKFENMERRRKQAQANAGKFDPSSLGSMTAAQVGAMAAGQKDATGPTMLFAQVGPGGLGEAGGSGDDGGPISKEETENVGGRLQQLAQLGSLEVSVYALDAGSVLVSSQRGWEGQQVWTMVFS 180
            MKAKAVLLSLGTMLLFSGLPACMGKRSAKDWSKMDLNELEKQWEDGDE+EELKTEEQAKFEN+ERRRKQAQANAGKFDPSSLGSMTAAQVGAMAAGQKDATGPTMLFAQV  GGLGE GGSGD+GG ISKEETE VGGRLQQLAQLGSLEVSVYALDAGSVLVSSQRGWEGQQ+   + S
Sbjct:    1 MKAKAVLLSLGTMLLFSGLPACMGKRSAKDWSKMDLNELEKQWEDGDEDEELKTEEQAKFENLERRRKQAQANAGKFDPSSLGSMTAAQVGAMAAGQKDATGPTMLFAQVRSGGLGETGGSGDNGGSISKEETEKVGGRLQQLAQLGSLEVSVYALDAGSVLVSSQRGWEGQQILDFLLS 180
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9140.17334.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHB1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.200e-11
Identity = 54/162 (33.33%), Postives = 83/162 (51.23%), Query Frame = 0 
Query:   13 MLLFSGLPACMGKRSAKDWSKMDLNELEKQWEDGDEEEELKTEEQAKFENMERRRKQAQANAGKFDPSSLGSMTAAQVGAMAAGQKDATGPTMLFAQVGPGGLGEAGGSGDDGGPISKEETENVGGRLQQLAQLGSLEVSVYALDAGSVLVSSQRGWEGQQV 174
            +L    L A    RS+KDW K+D + LE++W+ GDEE+EL T+++  F  M+RRR+Q        D  +L              Q+   GPTM+F ++ P           +GG  ++EE  N+ G  + L   G L V+ + ++   VL S Q+GW+G QV
Sbjct:    8 VLALLALLALAWGRSSKDWGKVDFDALEEEWKYGDEEDELITDDELLFREMQRRREQG------IDIKNLDVERVKH-------QQSMAGPTMMFIELRP----------REGG-YAEEELYNITGIWKDLMYTGGLTVTFFNIENDKVLCSMQKGWDGIQV 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9140.17334.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.740e-10492.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical2.200e-1133.33protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 46..73
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.696

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9140contigEcto-sp9_F_contig9140:1675..5300 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9140.17334.1mRNA_Ecto-sp9_F_contig9140.17334.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9140 1675..5300 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9140.17334.1 ID=prot_Ecto-sp9_F_contig9140.17334.1|Name=mRNA_Ecto-sp9_F_contig9140.17334.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=180bp
MKAKAVLLSLGTMLLFSGLPACMGKRSAKDWSKMDLNELEKQWEDGDEEE
ELKTEEQAKFENMERRRKQAQANAGKFDPSSLGSMTAAQVGAMAAGQKDA
TGPTMLFAQVGPGGLGEAGGSGDDGGPISKEETENVGGRLQQLAQLGSLE
VSVYALDAGSVLVSSQRGWEGQQVWTMVFS
back to top