prot_Ecto-sp9_F_contig913.17322.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig913.17322.1
Unique Nameprot_Ecto-sp9_F_contig913.17322.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length1298
Homology
BLAST of mRNA_Ecto-sp9_F_contig913.17322.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM5_9PHAE)

HSP 1 Score: 1544 bits (3997), Expect = 0.000e+0
Identity = 1006/1365 (73.70%), Postives = 1030/1365 (75.46%), Query Frame = 0
Query:   73 MASEEDKNHAPNGGGTPVLDTSWIDDSAVXXXXXXXXXXXXXXXXXXXXXXXXXRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXELTILRPPPQRDTDA-VTSPGANSAAAISVPASPGGSTASPDTDLPDPTAVADLFEAEEGTTPAPRSSPLGTLNNNETKPSSSSAPKKKSEGKQEPLGQASSAALARGRRSRRATFGGADARIRLEAENLAPVLPSKPPNPVPAAPAPTATRSPRAMGGEVVGAAEEQASGLSIAAXXXXXXXXXXEETPERVPXXXXXXXXXXXXXXXPRSSRRRSIVMPCEAQPLMDSDLGDGHAEAETAHMLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSRGSTSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAVPGSQRARRVAARLFCLTGYALSAVAPEDAWVLCEAAGDSMEWGLEGDEPRLVSQPVRRESKEQKRGLVLRIK---PLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKGPYLRHVRDVRASRVREFAAAXXXXXXXXXXXXXXXXX--ACPETAVDGMMPGVEKSASSSVKGTAISVACTSPTRAEAASKSRRDGEGLVAETVTDGLAAASGVTVGESATEKESLPPGAASGGGVDNNGDTPSKKIDGGGAVVAIGEGEARDDVSGGEEADVLAMTEGVTQEVSPEAAAETPRTIPPXXXXXXXXXXXXXXXXXXXETLVSSNDAAVVDGAGQEEAMAEAL-------------------------------------------------------------------------------------------------------------------------------------GRDGAPLAACGNRVDSVSERVEEAVSAYSPRRGGQTPRISTTGNPTSRNGGXXXXXXXXXXXXXXXXXDGAASPLVEQGQHEESLSGGTPGPGGTAWKASPFGVGSPFSAAAFGAGAPTVPPGGGVAVSPGQDDEGGAEEIAALEERLWAVVDAALREYHDGVALVRSRRNHHAFATXXXXXXXXXXXSAISCVPGAGAAVTPPPAAQVGERAASMTSSGLGPEEEAYASGLPAKAAPAATTPLTDDVDRTRAVAAPAAATVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGGAGXXXXXXXXXXS--QARGGKPRRRSLAKAFSSHKTSKGPKAHEGVGARPAAQAAGNESEARGDGVXXXXXXXXXXXXXXXXXXDTVMKPCQHSACGVCVDKLRGQAEQSGQALSCPWDRRGVDEICPLQEN 1296
            MASEEDK++APNGGG PVLDTSWIDDSAV                         RTLSPSIGKHNYMSNVDLNDPMKYPSLPSSG  XXXXX                    E+TILRPPPQRDTDA VTSPGA+SAAAISVPASP GSTASPDTDLPDPTAVADLFEAEEGTT A R SPLGTLNNNETKPSSSSAPKKKSEGKQ+PLGQASSAA+ARGRRSRRATFGGADARIRLEAENLAPVLPSKPPNPVPAA APTATRSPR M GEVVGA EEQASGLS A           EET +RV XXXXXXXXXXXXXXX      RSIVMPCEAQPLMDSDLG+ HAEAET +M P   XXXXXXXXXXXXXXXXXXXXXXXXX PS+GSTSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGA PGSQRARRVAARLFCLTGYALSAVAPEDA VLCEAAGDSMEWGLEGDEPRLVSQPVRRESKEQKRGLVLRIK   PLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYK PYLRHVRDVRASRVREFAAAXXXXXXXXXXXXXXXXX  AC ETAVDGMMPGVEK ASSSVKGTAISVAC SPTRAEAASKSRR+GEGLVA+  TD  AAAS VTVGE A  KESLPPGAAS G VDNNGDTPSKKIDGGGAVVAIGEGEARDDVSGGEEADVL +TEG TQE SPEAAAETPRT+                     ETLVSSN+AAVVDGAG+E+AMAEAL                                                                                                                                     GRDGAPLAACGNRVDS+SERVEEAVSAYSPRRGGQTP IS T NPTSRNGG                  GA+SP VEQGQHEESL GGTPGPGGTAWKAS FGVGSPFSAAA+GAGAPTVPP GGVAVSPGQDDEG AEEIAALEERLWAVVDAALREYHDGVALVRSRRNHHAFAT           +A+SCVP AGAA TPPPAAQVGE AAS TSSGLG EEEAYASGLPAKAAP  TTPLT DVDRTRAVAAPAAATV+ DGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGGAG XXXXXXXXX   +ARGGKPRRRSLAKAFSSHKT K PK HEG GAR AAQ AG ESEARGDGV          XXXXX   DTVMKPCQHSAC VCVDKLR Q EQSGQALSCPWDRRGVDEICPLQEN
Sbjct:    1 MASEEDKSNAPNGGGAPVLDTSWIDDSAVVAVAYGGDSGGVTRGRGGGKRRTRRRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGGDXXXXXNHQKSRSPSSHDQEFGGGLAEVTILRPPPQRDTDAAVTSPGADSAAAISVPASPSGSTASPDTDLPDPTAVADLFEAEEGTTLASRPSPLGTLNNNETKPSSSSAPKKKSEGKQDPLGQASSAAVARGRRSRRATFGGADARIRLEAENLAPVLPSKPPNPVPAARAPTATRSPRTMDGEVVGAVEEQASGLSTAIAAAATRPGDGEETQKRVXXXXXXXXXXXXXXXX--XXXXRSIVMPCEAQPLMDSDLGEDHAEAETPNMPP---XXXXXXXXXXXXXXXXXXXXXXXXXXPSQGSTSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEAAGDSMEWGLEGDEPRLVSQPVRRESKEQKRGLVLRIKVGDPLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKVPYLRHVRDVRASRVREFAAAXXXXXXXXXXXXXXXXXXXACRETAVDGMMPGVEKRASSSVKGTAISVACISPTRAEAASKSRRNGEGLVADPATDAFAAASRVTVGELAAAKESLPPGAASWG-VDNNGDTPSKKIDGGGAVVAIGEGEARDDVSGGEEADVLTITEGTTQEASPEAAAETPRTVTSGERLYVGVTAAVAKNAAAIETLVSSNEAAVVDGAGEEKAMAEALVRGEVQEVEDLEVWKDMTAPVVAGGGVETIRESAAGEVNLDSSPSSHGTPEAVVPHPLSARLREPHGDSGLETAAIHPPFSHGVPETHGVFVPEESSASRVPETSTPRVLATHGVVSPTTTSSVNAGSSGDEQGRDGAPLAACGNRVDSISERVEEAVSAYSPRRGGQTPMISATANPTSRNGGGSSVRVLGPPSSPPGSG-GASSPFVEQGQHEESLGGGTPGPGGTAWKASHFGVGSPFSAAAYGAGAPTVPPAGGVAVSPGQDDEG-AEEIAALEERLWAVVDAALREYHDGVALVRSRRNHHAFATAGAASETEENSTALSCVPDAGAAATPPPAAQVGETAASRTSSGLGLEEEAYASGLPAKAAPVDTTPLTGDVDRTRAVAAPAAATVEHDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGGAGAXXXXXXXXXXXXKARGGKPRRRSLAKAFSSHKTRKEPKVHEGAGARSAAQVAGIESEARGDGVGGGKTTRLTCXXXXXNACDTVMKPCQHSACSVCVDKLRSQGEQSGQALSCPWDRRGVDEICPLQEN 1357          
BLAST of mRNA_Ecto-sp9_F_contig913.17322.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM31_ECTSI)

HSP 1 Score: 1275 bits (3300), Expect = 0.000e+0
Identity = 897/1226 (73.16%), Postives = 912/1226 (74.39%), Query Frame = 0
Query:   73 MASEEDKNHAPNGGGTPVLDTSWIDDSAVXXXXXXXXXXXXXXXXXXXXXXXXXRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXELTILRPPPQRDTDA-VTSPGANSAAAISVPASPGGSTASPDTDLPDPTAVADLFEAEEGTTPAPRSSPLGTLNNNETKPSSSSAPKKKSEGKQEPLGQASSAALARGRRSRRATFGGADARIRLEAENLAPVLPSKPPNPVPAAPAPTATRSPRAMGGEVVGAAEEQASGLSIAAXXXXXXXXXXEETPERVPXXXXXXXXXXXXXXXPRSSRRRSIVMPCEAQPLMDSDLGDGHAEAETAHMLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSRGSTSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAVPGSQRARRVAARLFCLTGYALSAVAPEDAWVLCEAAGDSMEWGLEGDEPRLVSQPVRRESKEQKRGLVLRIKPLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKGPYLRHVRDVRASRVREFAAAXXXXXXXXXXXXXXXXXACPETAVDGMMPGVEKSASSSVKGTAISVACTSPTRAEAASKSRRDGEGLVAETVTDGLAAASGVTVGESATEKESLPPGAASGGGVDNNGDTPSKKIDGGGAVVAIGEGEARDDVSGGEEADVLAMTEGVTQEVSPEAAAETPRTIPPXXXXXXXXXXXXXXXXXXXETLVSSNDAAVVDGAGQEEAMAEALGRDGAPLAACGNRVDSVSERVEEAVSAYSPRRGGQTPRISTTGNPTSRNGGXXXXXXXXXXXXXXXXXDGAASPLVEQGQHEESLSGGTPGPGGTAWKASPFGVGSPFSAAAFGAGAPTVPPGGGVAVSPGQDDEGGAEEIAALEERLWAVVDAALREYHDGVALVRSRRNHHAFATXXXXXXXXXXXSAISCVPGAGAAVTPPPAAQVGERAASMTSSGLGPEEEAYASGLPAKAAPAATTPLTDDVDRTRAVAAPAAATVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGGAGXXXXXXXXXXSQARGGKPRRRSLAKAFSSHKTSKGPKAHEGVGARPAAQAAGNESEARGDGVXXXXXXXXXXXXXXXXXXDTVMKPCQHSACGVCVDKLRGQAEQSGQALSCPWDRRGVDEICPLQENN 1297
            MASEEDK HAPNGGGT VLDTSWID+SAV   XXXXXXXXXXXXXXXXXXXXX RTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXELTILRPPPQRDTDA VTSPGA+SAAAISVPASP GSTASPDTDLPDPTAVADLFEAEEGTTPAPR SPLGTLNNNETKPSSSSAPKKKSEGKQEP GQASSAA+ARGR SRRATFGGADARIRLEAENLAPVLPSKPPNPVPAAPAPTATRSPRAM GEVVGAAEEQASGLS AA          EET ERVPXXXXXXXXXXXXXXX      RSIVMPCEAQPLMDSDLGDGHAEA        XXXXXXXXXXXXXXXXXXXXXXXXXXXKPSRG+TSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGA PGSQRARRVAARLFCLTGYALSAVAPEDA VLCE AGDSMEWGLEGDEPRLVSQPVRRESKEQKRGLVLRIKPLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKGPYLRHVRDVRASRVREFAAA XXXXXXXXXXXXXXX ACPETAVDGMMPGVEKSASSSVKGTAISVACTSPTRAEAASKSRRDGEGLVA+  TD   AASGVTV ES TEKESL PGAA GGGVDNNGDTPSKKIDGGGAVVA+ EGEARDD SG EEADVLAMT+G+TQE SPEAAAETPRTI P                   ETLV S++AAVVDGAGQEEAMAEALGR                                           T++                                                                                                                                                               +VGE AASMTSSGLGP+E+AYASGLPAKAAPAATTPLTDDV RTRAVAAPAAATVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWG      XXXXXXX    GGK RRRSLAKAFSSHKT K PKAHEGVGARPAAQAAGNESEARGDGV                  DTVMKPCQHSACGVCVDKLRGQAEQSGQALSCPWDRRGVDEI PLQE N
Sbjct:    1 MASEEDKRHAPNGGGTLVLDTSWIDNSAVVAVXXXXXXXXXXXXXXXXXXXXXRRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXELTILRPPPQRDTDAAVTSPGADSAAAISVPASPSGSTASPDTDLPDPTAVADLFEAEEGTTPAPRPSPLGTLNNNETKPSSSSAPKKKSEGKQEPRGQASSAAVARGRLSRRATFGGADARIRLEAENLAPVLPSKPPNPVPAAPAPTATRSPRAMDGEVVGAAEEQASGLSTAAAAPVTRPGDGEETQERVPXXXXXXXXXXXXXXX--XXXXRSIVMPCEAQPLMDSDLGDGHAEAXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXKPSRGNTSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEVAGDSMEWGLEGDEPRLVSQPVRRESKEQKRGLVLRIKPLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKGPYLRHVRDVRASRVREFAAARXXXXXXXXXXXXXXX-ACPETAVDGMMPGVEKSASSSVKGTAISVACTSPTRAEAASKSRRDGEGLVADPATDAFPAASGVTVEESPTEKESLLPGAALGGGVDNNGDTPSKKIDGGGAVVAVEEGEARDDASGAEEADVLAMTDGITQETSPEAAAETPRTITPGEGGGVGTTAAVATNAAEIETLVPSDEAAVVDGAGQEEAMAEALGR-------------------------------------------TTK---------------------------------------------------------------------------------------------------------------------------------------------------------------KVGEIAASMTSSGLGPKEDAYASGLPAKAAPAATTPLTDDVGRTRAVAAPAAATVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGAGAEAGXXXXXXXXXQAGGKARRRSLAKAFSSHKTRKEPKAHEGVGARPAAQAAGNESEARGDGVGGGKTTTLTCRLCCRNACDTVMKPCQHSACGVCVDKLRGQAEQSGQALSCPWDRRGVDEIRPLQEKN 1020          
BLAST of mRNA_Ecto-sp9_F_contig913.17322.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.620e-14
Identity = 64/166 (38.55%), Postives = 90/166 (54.22%), Query Frame = 0
Query:  506 LFRAFYGAVPGSQRARRVAARLFCLTGYALSAVAPEDAWVLCEAAGD--------SMEWGLEGDE--------PRLVSQP--VRRESKEQKRGLVLRIKPLFDLMDKASKDEKLKAESATGVVSRKAAPDG-FCYEDR-ETGEPVEPGAYKGPYLRHVRDVRASRV 651
            L R +  A PG QRARR+AAR++CL+GY LSAVA  DA +LC A           +++W  +           PRL + P  +R  S  QKR LVLR++P+ + M+ +   E+   E+ATG+   +A  DG + Y D    G  V P  Y   YL+H+  VRA R+
Sbjct:  328 LCREYAAATPGGQRARRIAARVYCLSGYPLSAVAATDAELLCAARXXXXXXXXXAALDWPTDPRRDDPAAPPLPRLDALPAAMRGASNAQKRALVLRLRPVLERMEASGSVERAALEAATGLACERA--DGMYRYRDGGRAGRIVAPALYAERYLQHLAAVRAERL 491          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig913.17322.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
RING-type0.000e+073.70domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RING-type0.000e+073.16domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RING-type1.620e-1438.55domain-containing protein n=1 Tax=Tribonema minus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1227..1296
e-value: 8.4E-6
score: 27.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 1240..1284
score: 9.598
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1234..1293

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig913contigEcto-sp9_F_contig913:10907..16528 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig913.17322.1mRNA_Ecto-sp9_F_contig913.17322.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig913 10907..17097 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig913.17322.1 ID=prot_Ecto-sp9_F_contig913.17322.1|Name=mRNA_Ecto-sp9_F_contig913.17322.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1298bp
MRRDLRTGVAFLRRKTPRYSTVGHFHHNQCEERLRVSTGCLTPEVCKNST
GVSTQKLVPPAEEASQSQGYICMASEEDKNHAPNGGGTPVLDTSWIDDSA
VVAVASGGGSGGVTRGRGGGKRRTRRRTLSPSIGKHNYMSNVDLNDPMKY
PSLPSSGGDDGGSSNHQKSSSPSSHDQEIGGGSAELTILRPPPQRDTDAV
TSPGANSAAAISVPASPGGSTASPDTDLPDPTAVADLFEAEEGTTPAPRS
SPLGTLNNNETKPSSSSAPKKKSEGKQEPLGQASSAALARGRRSRRATFG
GADARIRLEAENLAPVLPSKPPNPVPAAPAPTATRSPRAMGGEVVGAAEE
QASGLSIAAAAAATGPGDGEETPERVPPPPPPPPAAATKKSRPRSSRRRS
IVMPCEAQPLMDSDLGDGHAEAETAHMLPPPPPPPTTPATGGDGTATAAA
APADGDGKPSRGSTSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDE
DTRKRLFRAFYGAVPGSQRARRVAARLFCLTGYALSAVAPEDAWVLCEAA
GDSMEWGLEGDEPRLVSQPVRRESKEQKRGLVLRIKPLFDLMDKASKDEK
LKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKGPYLRHVRDVRASR
VREFAAARRVVVAAAAAAAASSSSACPETAVDGMMPGVEKSASSSVKGTA
ISVACTSPTRAEAASKSRRDGEGLVAETVTDGLAAASGVTVGESATEKES
LPPGAASGGGVDNNGDTPSKKIDGGGAVVAIGEGEARDDVSGGEEADVLA
MTEGVTQEVSPEAAAETPRTIPPGGGGGVGATAAVTTNAAAVETLVSSND
AAVVDGAGQEEAMAEALGRDGAPLAACGNRVDSVSERVEEAVSAYSPRRG
GQTPRISTTGNPTSRNGGGSSARVLGPSSSPPGGGDGAASPLVEQGQHEE
SLSGGTPGPGGTAWKASPFGVGSPFSAAAFGAGAPTVPPGGGVAVSPGQD
DEGGAEEIAALEERLWAVVDAALREYHDGVALVRSRRNHHAFATAAAASE
AEKNSSAISCVPGAGAAVTPPPAAQVGERAASMTSSGLGPEEEAYASGLP
AKAAPAATTPLTDDVDRTRAVAAPAAATVDTDGQPTPDSPLLPLLQLRLS
EEEDDERFEYSLAWGGAGAEAGGGGGGSSQARGGKPRRRSLAKAFSSHKT
SKGPKAHEGVGARPAAQAAGNESEARGDGVGDGKTTRLTCRLCCRNACDT
VMKPCQHSACGVCVDKLRGQAEQSGQALSCPWDRRGVDEICPLQENN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING