prot_Ecto-sp9_F_contig9112.17307.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9112.17307.1
Unique Nameprot_Ecto-sp9_F_contig9112.17307.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length143
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9112.17307.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ33_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.700e-24
Identity = 87/136 (63.97%), Postives = 90/136 (66.18%), Query Frame = 0 
Query:   36 SHGGAPVGGWGSAGPYSSSGGGVGGVEEPLPPGWSEKTTSSGATFYENHATKTTTWKRPAXXXXXXXXXXXXXXXXXXXX-------------QYQPRVDGYG-----------------STSSVSWEEPRLPPPA 141
            SHGGAPVGG GSAGPYS     VGGVEEPLPPGWSEKTTSSGAT+YENHATKTTTWKRPAXXXXXXXXXXXXXXXXXXXX             QYQ RVD YG                 +T    W+ P  PP A
Sbjct:  522 SHGGAPVGGGGSAGPYSXXXXXVGGVEEPLPPGWSEKTTSSGATYYENHATKTTTWKRPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYQQRVDSYGWWSQRMTNAGEVFYVNHNTKVTQWDRPSSPPQA 657
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9112.17307.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.700e-2463.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 1..29
e-value: 0.089
score: 21.9
coord: 64..96
e-value: 3.6E-9
score: 46.5
IPR001202WW domainPFAMPF00397WWcoord: 65..94
e-value: 2.9E-9
score: 36.8
coord: 1..27
e-value: 2.9E-6
score: 27.3
IPR001202WW domainPROSITEPS01159WW_DOMAIN_1coord: 2..27
IPR001202WW domainPROSITEPS01159WW_DOMAIN_1coord: 69..94
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 1..29
score: 14.146
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 63..96
score: 16.491
NoneNo IPR availableGENE3D2.20.70.10coord: 61..101
e-value: 3.9E-14
score: 53.9
NoneNo IPR availableGENE3D2.20.70.10coord: 1..31
e-value: 3.1E-10
score: 41.7
NoneNo IPR availablePANTHERPTHR17616YES-ASSOCIATED PROTEINcoord: 1..29
coord: 64..117
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 63..95
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 1..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9112contigEcto-sp9_F_contig9112:6..1685 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9112.17307.1mRNA_Ecto-sp9_F_contig9112.17307.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9112 6..1685 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9112.17307.1 ID=prot_Ecto-sp9_F_contig9112.17307.1|Name=mRNA_Ecto-sp9_F_contig9112.17307.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=143bp
GWSAKTTSTGSVYYEHHATKTTTWDRPKAPAAPAPSHGGAPVGGWGSAGP
YSSSGGGVGGVEEPLPPGWSEKTTSSGATFYENHATKTTTWKRPAPAPAP
APVPPPQPAAPSPLPQYQPRVDGYGSTSSVSWEEPRLPPPADA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR036020WW_dom_sf