prot_Ecto-sp9_F_contig9095.17276.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9095.17276.1
Unique Nameprot_Ecto-sp9_F_contig9095.17276.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length101
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9095.17276.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF0_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 4.310e-54
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 
Query:    1 VPPGPLGVVLDGEVGDRPVVLEIPGQSGPAQVFQTVDGSRDNPAGSTMPEGFATTPTGTNPAATTTPFKVKPKVTRKDRAKRLLLNLATKHHFHANA 97
            VPPGPLGVVLDGEVGDRPVVLEIPGQSGPAQVFQTVDGSRDNPAGSTMPEGFATTPTGTNPAATTTPFKVKPKVTRKDRAKRLLLNLATKHHFH NA
Sbjct:  293 VPPGPLGVVLDGEVGDRPVVLEIPGQSGPAQVFQTVDGSRDNPAGSTMPEGFATTPTGTNPAATTTPFKVKPKVTRKDRAKRLLLNLATKHHFHTNA 389
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9095.17276.1 vs.
Match: C2 (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM70_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 8.110e-53
Identity = 96/101 (95.05%), Postives = 96/101 (95.05%), Query Frame = 0 
Query:    1 VPPGPLGVVLDGEVGDRPVVLEIPGQSGPAQVFQTVDGSRDNPAGSTMPEGFATTPTGTNPAATTTPFKVKPKVTRKDRAKRLLLNLATKHHFHANATATS 101
            VPPGPLGVVLDGEVGDRPVVLEIPGQS PA VFQTVDGS DN AGSTMPEGFATTPTGTNPAATTTPFKVKPKVTRKDRAKRLLLNLATKHHFH NATATS
Sbjct:  173 VPPGPLGVVLDGEVGDRPVVLEIPGQSDPAHVFQTVDGSGDNAAGSTMPEGFATTPTGTNPAATTTPFKVKPKVTRKDRAKRLLLNLATKHHFHTNATATS 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9095.17276.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
C24.310e-5498.97domain-containing protein n=1 Tax=Ectocarpus silic... [more]
C28.110e-5395.05domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9095contigEcto-sp9_F_contig9095:2161..2944 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9095.17276.1mRNA_Ecto-sp9_F_contig9095.17276.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9095 2161..2944 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9095.17276.1 ID=prot_Ecto-sp9_F_contig9095.17276.1|Name=mRNA_Ecto-sp9_F_contig9095.17276.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=101bp
VPPGPLGVVLDGEVGDRPVVLEIPGQSGPAQVFQTVDGSRDNPAGSTMPE
GFATTPTGTNPAATTTPFKVKPKVTRKDRAKRLLLNLATKHHFHANATAT
S
back to top