prot_Ecto-sp9_F_contig905.17241.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig905.17241.1
Unique Name	prot_Ecto-sp9_F_contig905.17241.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	457

Homology

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Ubiquitin-like (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX4_ECTSI)

HSP 1 Score: 575 bits (1482), Expect = 8.900e-202
Identity = 420/459 (91.50%), Postives = 421/459 (91.72%), Query Frame = 0

Query:    1 MAEGADAVSAASPTATIAVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---AVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGMGGGGMPDMATMARMAQSPAVMQGMXXXXXXXXXXXXXXXXXXXMQSVMARPGGLTQAFEAIQNNXXXXXXXXXXXXXXTALQRAAQMDFGGALAAGINAAPPNAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED 456
            MAEGADAVSAAS TATI VKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGAS XXXXXXXXXXXXXXXXXXXX                        AVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGG GGGGMPDMATMARMAQ+PAVMQG XXXXXXXXXXXXXXXXXXXMQSVMARPGGL QAFEAIQNN   XXXXXXXXXX TALQRAAQMDFGGALAAGINAAPPNAAQG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED
Sbjct:    1 MAEGADAVSAASATATIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED 459

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMK3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.900e-17
Identity = 72/228 (31.58%), Postives = 117/228 (51.32%), Query Frame = 0

Query:   16 TIAVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEP--KRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL 241
            T+ VK TS ++   +++++ + +V   K AI+++  V+P  +R+I +G+IL KDDQ L   K+  G TV++QV    A+                                             ++ +  A+  +S  P    R  L TL KVIDNI  +P E+KYR+++ ANA F+RKVG++PGG  C+R +GF + G+ + + +LAPS  AW+ L + R  +Q  L
Sbjct:    7 TVKVKRTSGEQMV-EMTVAPDLSVQAFKEAIQAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGTQAPVAAAAPMPPTAAAMAGT--------------TAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTD-GEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNT8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.470e-16
Identity = 72/228 (31.58%), Postives = 117/228 (51.32%), Query Frame = 0

Query:   16 TIAVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEP--KRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL 241
            T+ VK TS ++   +++++ + +V   K AI+++  V+P  +R+I +G+IL KDDQ L   K+  G TV++QV    A+                                             ++ +  A+  +S  P    R  L TL KVIDNI  +P E+KYR+++ ANA F+RKVG++PGG  C+R +GF + G+ + + +LAPS  AW+ L + R  +Q  L
Sbjct:    7 TVKVKRTSGEQMV-EMTVAPDLSVQAFKEAIQAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGTQAPVAAAAPMPPTAAAMAGT--------------TAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTD-GEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DE04_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.910e-15
Identity = 88/235 (37.45%), Postives = 122/235 (51.91%), Query Frame = 0

Query:   26 KAAGQVSISLE----GTVGELKGAIRS---QFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSSSPVGQAVATVSRQPAGVARE--------CLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLP 245
            K  G+ S+SL+     T+GELK  I +   +   E +R++FQG +L  D +TL + KL +G  V++ VL+P  S                       XXXXXXXXXXXXXXXX      SS    AV  +    AGV            L TL+ ++ NI A+P EEK+R+ K++N  F R+VG+  G  A +RA GF E   + ++W L PSE  W VL   + +I  A+A LP
Sbjct:   19 KGGGENSVSLKVVPNTTIGELKAQIAASALEVPCESQRLVFQGCMLKDDRKTLAEHKLTEGSCVLLSVLSPSVSNSGSSASPSIACPAPSSLPSNNPXXXXXXXXXXXXXXXX------SSTASPAVVILRAAIAGVRSSNSTEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQE---SAQAWHLQPSEQGWGVLCTAKGEIDAAIAALP 244

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.770e-15
Identity = 67/229 (29.26%), Postives = 91/229 (39.74%), Query Frame = 0

Query:   19 VKFTSSDKAAGQVSI---SLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATL 244
            VKFT+    +G   I       T+ +LK AI  Q     KRIIFQGR+L+KD+ TL + K++DG T+                                                                                   V DNI  HP EEKYR IK++N  F+ +VG VPGG A ++ALGF +     ++W+L PS  AW  L  GR  +Q  L++L
Sbjct:  133 VKFTTGGDGSGGTLILPSQANTTIAQLKSAITEQLGKATKRIIFQGRVLSKDEATLAEMKVQDGQTI----------------------------------------------------------------------------------HVADNIINHPLEEKYRSIKKSNKSFAARVGNVPGGAAAIQALGFTDSPTVPDTWVLLPSADAWPTLRQGRDLLQSTLSSL 279

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C198_THAPS)

HSP 1 Score: 80.9 bits (198), Expect = 9.730e-13
Identity = 68/179 (37.99%), Postives = 93/179 (51.96%), Query Frame = 0

Query:  137 SSSPVGQAVATV-SRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFV-EHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL----ATLPGAPAAAGASTGGFA--------GGLGVLPPPGAFPQAGFGGGMGGGGMPDMATMARMAQSPAVM 301
            +SSP+  A+ T+ +   +   R  L T  K++ NI +HP EEKYR IK++N  F +++G V GGEA + A GFV E G   ES++L PS  AW  L A   +IQR L    AT   +P+A   S             GG+  L P G  P    GG +GG GM   A M  M  +P ++
Sbjct:  125 TSSPLASAMLTLRTNNNSETYRTALATADKLLSNIISHPMEEKYRSIKKSNPAFHKRLGGVSGGEALLLASGFVVESGGGVESYVLRPSADAWPRLVAAGEEIQRVLTEANATSASSPSATYDSNXXXXXXXXXXXXGGMSNLFP-GGIPSNAMGGSLGGPGME--AAMQSMLSNPQML 300

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXK5_TRICV)

HSP 1 Score: 75.9 bits (185), Expect = 4.570e-11
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 0

Query:  137 SSSPVGQAVATV-SRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEH---GDA-QESWLLAPSEAAWNVLTAGRVDIQRALA 242
            +S P+  A+ T+ SR      +  L TL K++ N+K+HP EEKYR++K+ NA F R++G +PGG   M A GF VE    GDA +E + L PS  AW  L A +  +  ALA
Sbjct:  173 ASDPLPAALGTIRSRCTPAQYKTALQTLDKLLGNVKSHPMEEKYRRVKKGNAAFQRRLGGLPGGHDAMLAAGFTVEQECSGDACEEIYSLTPSADAWPKLVAAKDAVATALA 284

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQX1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.790e-10
Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 0

Query:  137 SSSPVGQAVATV-SRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF---VEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPG--------APAAAGASTGGFAGGLGVLPPPGAFPQ 273
            +S P+G A+  + S  P  V    + TL KV+ NI +HP EEKYR++K+ N  F +++G + GG  CM A GF   V+ G+  E + L  +  +WN L   +  ++ A+A            AP  AG   GG        PPPG  P 
Sbjct:  144 ASDPLGLALERLRSGNPPSVYATAVGTLGKVLGNIVSHPMEEKYRRVKKQNPAFRKRLGGLAGGHDCMLACGFRVEVDEGENAEVYKLHATADSWNALVEAKTRVEEAVAKAAAGDRQQPVQAPGPAGLLPGGG------FPPPGGLPN 286

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IH61_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.990e-9
Identity = 56/165 (33.94%), Postives = 82/165 (49.70%), Query Frame = 0

Query:  160 LTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEA-AWNVLTA------GRVDI-QRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGG------GMGGGGMPD------MATMARMAQSPAVMQGM 304
            L TL+K++ NI +HP EEKYR++K+ NA F R++G +  G   M A+GFVE  +  E + +  + A AW  L        G V++ +R +     AP    A        +G + PP      GFGG      GMGGGG+P          +A M  +P  ++GM
Sbjct:   65 LQTLSKLLTNITSHPMEEKYRRVKKGNAAFQRRLGGLEKGHEVMLAVGFVEKSEEGEDYYVMEASAEAWPALVKNAEVVKGEVEVVKRRVEGAGSAPTPQPA--------VGTMAPP--MGAGGFGGSXXXXSGMGGGGLPQNIPPGMQDAVANMMSNPEALRGM 219

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BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG88_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.550e-9
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0

Query:  149 SRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEHGDAQESWLLAPSEAAWNVL 230
            S  P  V    + TL KV+ NI A+P EEKYR++KR N  F +++G + GG ACM A GF VE   A+E + L  S   WN L
Sbjct:  193 SNNPPSVYATAVATLEKVLTNIVANPMEEKYRRVKRQNPAFRKRLGGLGGGHACMLACGFTVEQQAAEEVYQLRASADRWNNL 275

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig905.17241.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 24


Match Name	E-value	Identity	Description
Ubiquitin-like	8.900e-202	91.50	domain-containing protein n=2 Tax=Ectocarpus TaxID...	[more]
Hypothetical	2.900e-17	31.58	protein (Fragment) n=1 Tax=Rhizochromulina marina ...	[more]
Hypothetical	2.470e-16	31.58	protein n=1 Tax=Rhizochromulina marina TaxID=10348...	[more]
Ubiquitin-like	1.910e-15	37.45	domain-containing protein n=1 Tax=Nannochloropsis ...	[more]
Uncharacterized	8.770e-15	29.26	protein n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]
Ubiquitin-like	9.730e-13	37.99	domain-containing protein n=1 Tax=Thalassiosira ps...	[more]
Hypothetical	4.570e-11	42.86	protein n=1 Tax=Trieres chinensis TaxID=1514140 Re...	[more]
Ubiquitin-like	1.790e-10	34.23	domain-containing protein n=1 Tax=Pseudo-nitzschia...	[more]
Hypothetical	3.990e-9	33.94	protein n=1 Tax=Helicotheca tamesis TaxID=374047 R...	[more]
Hypothetical	9.550e-9	45.78	protein n=1 Tax=Pseudo-nitzschia australis TaxID=4...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018997	PUB domain	SMART	SM00580	PGNneu	coord: 158..222 e-value: 7.2E-13 score: 58.8
IPR018997	PUB domain	PFAM	PF09409	PUB	coord: 157..229 e-value: 7.0E-20 score: 70.8
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 30..84 e-value: 2.1E-9 score: 37.0
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 15..91 score: 13.707
None	No IPR available	GENE3D	1.20.58.2190		coord: 140..240 e-value: 7.9E-21 score: 75.5
None	No IPR available	GENE3D	3.10.20.90		coord: 3..91 e-value: 1.8E-10 score: 42.4
None	No IPR available	PANTHER	PTHR10677:SF3	FI07626P-RELATED	coord: 1..124
IPR015496	Ubiquilin	PANTHER	PTHR10677	UBIQUILIN	coord: 1..124
IPR036339	PUB-like domain superfamily	SUPERFAMILY	143503	PUG domain-like	coord: 145..241
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 15..102

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig905	contig	Ecto-sp9_F_contig905:17540..20222 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig905.17241.1	mRNA_Ecto-sp9_F_contig905.17241.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig905 16338..20377 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig905.17241.1 ID=prot_Ecto-sp9_F_contig905.17241.1|Name=mRNA_Ecto-sp9_F_contig905.17241.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=457bp
MAEGADAVSAASPTATIAVKFTSSDKAAGQVSISLEGTVGELKGAIRSQF
DVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASASPSPAAA
TAPAAAAAAASPATPNPAAGLATATQSMSGLGLGAVSSSPVGQAVATVSR
QPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGE
ACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAA
AGASTGGFAGGLGVLPPPGAFPQAGFGGGMGGGGMPDMATMARMAQSPAV
MQGMMNDPSVQAMMRSNPQMAAAMQSVMARPGGLTQAFEAIQNNPAMAQV
AQQMMQDPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPPAGGQGGAP
AAPSAAAGAAPSPPPAAVPAAAVPPASEGGGEAGEEGKEMTEDELIAEAI
RRSMED*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018997	PUB_domain
IPR000626	Ubiquitin_dom
IPR015496	Ubiquilin
IPR036339	PUB-like_dom_sf
IPR029071	Ubiquitin-like_domsf